BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0192400 Os06g0192400|AK108798
         (330 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57500.1  | chr5:23286406-23287525 REVERSE LENGTH=319          189   2e-48
AT3G06440.1  | chr3:1972913-1975272 REVERSE LENGTH=620             70   2e-12
AT1G74800.1  | chr1:28102221-28104993 REVERSE LENGTH=673           52   3e-07
AT1G27120.1  | chr1:9421389-9423910 FORWARD LENGTH=674             52   5e-07
AT5G62620.1  | chr5:25137136-25139764 FORWARD LENGTH=682           49   5e-06

>AT5G57500.1 | chr5:23286406-23287525 REVERSE LENGTH=319
          Length = 318

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/263 (40%), Positives = 147/263 (55%), Gaps = 26/263 (9%)

Query: 70  VRPEISILVGVHTMAKKHSRRHLVRMAYAVQQTAALRGAARVDVRFALCARPMPQEHRAF 129
           V  EI IL+G+ T+  ++SRRH +RM Y  Q         +VDV+F  C     ++ +  
Sbjct: 65  VDDEIRILIGILTLPDQYSRRHFLRMIYGTQNVP---DGVKVDVKFVFCNL-TKEDQKVL 120

Query: 130 VALEARAYGDVMLIDCDESPDKGKTYDYFAGLPAMLSSXXXXXXXXXXRPYDYVMKVDDD 189
           VALE   Y D+++++C+E+ +KGKTY YF+ LP + +            PY YVMK DDD
Sbjct: 121 VALEIMRYDDIIILNCNENMNKGKTYTYFSSLPDIFNETDAQKP-----PYHYVMKADDD 175

Query: 190 TYLRLDELAETLRRAPREDMYYGAGLPFLDKESPPF---MLGMGYVLSWDLVEWIAGSDM 246
           TY+RL+ L  +LR  PRED+YYG  +P    +  PF   M GMGY++SWD+  W+  S++
Sbjct: 176 TYIRLESLVASLRPLPREDLYYGYVIPCPSMD--PFVHYMSGMGYLVSWDIAVWLKDSEI 233

Query: 247 AKALAIGAEDVTTGTWLNMGNKAKNRVNIFPRMYDFKGVKPE-------DFLEDTIGVHQ 299
            K    G ED   G W+  G + KNR N    MY+F    PE       +   DTI VH 
Sbjct: 234 PKKHLEGPEDKVFGDWIREGRRGKNRFNAKWSMYNF----PEPPTRCTHELWPDTIAVHL 289

Query: 300 LKQDLRWAQTLEHFNVTC-LDPS 321
           LK   +W +TL +FNVT  L PS
Sbjct: 290 LKNQEKWIRTLNYFNVTSNLKPS 312



>AT3G06440.1 | chr3:1972913-1975272 REVERSE LENGTH=620
          Length = 619

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 34/219 (15%)

Query: 74  ISILVGVHTMAKKHSRRHLVRMAYAVQQTAALRGAARVDVRFALCARPMPQEHRAFVALE 133
           I +LVGV +      RR  +R ++   Q  A+R + +V VRF L      ++    +  E
Sbjct: 371 IELLVGVFSTGNNFKRRMALRRSW--MQYEAVR-SGKVAVRF-LIGLHTNEKVNLEMWRE 426

Query: 134 ARAYGDVMLIDCDESPDKGKTYDYFAGLPAMLSSXXXXXXXXXXRPYDYVMKVDDDTYLR 193
           ++AYGD+  +            DY+  L   L +           P  Y+MK DDD ++R
Sbjct: 427 SKAYGDIQFM---------PFVDYYGLLS--LKTVALCILGTKVIPAKYIMKTDDDAFVR 475

Query: 194 LDELAETLRRAPREDMYYG------------AGLPFLDKES------PPFMLGMGYVLSW 235
           +DEL  +L   P   + YG                F+ KE       PP+  G GY++S 
Sbjct: 476 IDELLSSLEERPSSALLYGLISFDSSPDREQGSKWFIPKEEWPLDSYPPWAHGPGYIISH 535

Query: 236 DLVEWIAGSDMAKALAI-GAEDVTTGTWLNMGNKAKNRV 273
           D+ +++      + L +   EDV  G W+   N+   RV
Sbjct: 536 DIAKFVVKGHRQRDLGLFKLEDVAMGIWIQQFNQTIKRV 574



>AT1G74800.1 | chr1:28102221-28104993 REVERSE LENGTH=673
          Length = 672

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)

Query: 74  ISILVGVHTMAKKHSRRHLVRMAYAVQQTAALRGAARVDVRF--ALCARPMPQEHRAFVA 131
           + I +G+ +     S R  VR ++       L  +A+V  RF  AL  R   +E    + 
Sbjct: 423 VEIFIGILSAGNHFSERMAVRKSWMQH---VLITSAKVVARFFVALHGR---KEVNVELK 476

Query: 132 LEARAYGDVMLIDCDESPDKGKTYDYFAGLPAMLSSXXXXXXXXXXRPYDYVMKVDDDTY 191
            EA  +GD++L+   +S      YD       +L +              Y+MK DDDT+
Sbjct: 477 KEAEYFGDIVLVPYMDS------YDL-----VVLKTVAICEHGALAFSAKYIMKCDDDTF 525

Query: 192 LRLDELAETLRRAPREDMYYGAGLPFLDK-----------------ESPPFMLGMGYVLS 234
           ++L  +   +++ P     Y   + +  K                 + PP+  G GYVLS
Sbjct: 526 VKLGAVINEVKKVPEGRSLYIGNMNYYHKPLRGGKWAVTYEEWPEEDYPPYANGPGYVLS 585

Query: 235 WDLVEWIAGS-DMAKALAIGAEDVTTGTWLNMGNKAKNRVN 274
            D+  +I    +  K      EDV+ G W+       N V+
Sbjct: 586 SDIARFIVDKFERHKLRLFKMEDVSVGMWVEHFKNTTNPVD 626



>AT1G27120.1 | chr1:9421389-9423910 FORWARD LENGTH=674
          Length = 673

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 39/218 (17%)

Query: 74  ISILVGVHTMAKKHSRRHLVRMAYAVQQTAALRGAARVDVRF--ALCARPMPQEHRAFVA 131
           + + +G+ +     + R  VR ++  Q+   L  +++V  RF  AL AR   +E    + 
Sbjct: 425 VELFIGILSAGNHFAERMAVRKSWMQQK---LVRSSKVVARFFVALHAR---KEVNVDLK 478

Query: 132 LEARAYGDVMLIDCDESPDKGKTYDYFAGLPAMLSSXXXXXXXXXXRPYDYVMKVDDDTY 191
            EA  +GD++++   +       YD       +L +              YVMK DDDT+
Sbjct: 479 KEAEYFGDIVIVPYMDH------YDL-----VVLKTVAICEYGVNTVAAKYVMKCDDDTF 527

Query: 192 LRLDE-LAETLRRAPREDMYYGAGLPFLDKE-----------------SPPFMLGMGYVL 233
           +R+D  + E  +   RE +Y G  + F  K                   PP+  G GY+L
Sbjct: 528 VRVDAVIQEAEKVKGRESLYIG-NINFNHKPLRTGKWAVTFEEWPEEYYPPYANGPGYIL 586

Query: 234 SWDLVEWIAGSDMAKALAI-GAEDVTTGTWLNMGNKAK 270
           S+D+ ++I      K L +   EDV+ G W+   N+ +
Sbjct: 587 SYDVAKFIVDDFEQKRLRLFKMEDVSMGMWVEKFNETR 624



>AT5G62620.1 | chr5:25137136-25139764 FORWARD LENGTH=682
          Length = 681

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 37/222 (16%)

Query: 73  EISILVGVHTMAKKHSRRHLVRMAYAVQQTAALRGAARVDVRF--ALCARPMPQEHRAFV 130
           ++ + +G+ +     + R  VR ++   +   L  +++V  RF  AL +R   +E    +
Sbjct: 431 QVDMFIGILSAGNHFAERMAVRRSWMQHK---LVKSSKVVARFFVALHSR---KEVNVEL 484

Query: 131 ALEARAYGDVMLIDCDESPDKGKTYDYFAGLPAMLSSXXXXXXXXXXRPYDYVMKVDDDT 190
             EA  +GD++++   +S      YD       +L +              ++MK DDDT
Sbjct: 485 KKEAEFFGDIVIVPYMDS------YDL-----VVLKTVAICEYGAHQLAAKFIMKCDDDT 533

Query: 191 YLRLDELAETLRRAPREDMYYGAGLPFLDK-----------------ESPPFMLGMGYVL 233
           ++++D +    ++ P +   Y   + +  K                 + PP+  G GY+L
Sbjct: 534 FVQVDAVLSEAKKTPTDRSLYIGNINYYHKPLRQGKWSVTYEEWPEEDYPPYANGPGYIL 593

Query: 234 SWDLVEWIAGS-DMAKALAIGAEDVTTGTWLNMGNKAKNRVN 274
           S D+  +I    +  K      EDV+ G W+   N     V+
Sbjct: 594 SNDISRFIVKEFEKHKLRMFKMEDVSVGMWVEQFNNGTKPVD 635



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,729,722
Number of extensions: 258678
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 5
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)