BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0190500 Os06g0190500|J033118L15
         (155 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29110.1  | chr2:12506880-12510552 REVERSE LENGTH=948           52   2e-07

>AT2G29110.1 | chr2:12506880-12510552 REVERSE LENGTH=948
          Length = 947

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 21  LVHNLSTAMLDVTSGDEGSRMETKWFGAEAVSPSNAIPNT--DSAPLTLRSFSGLFIITG 78
           L  ++S A+L+VT GDE   +E KWF  +   P    P T   S  L+LRSF GLF+I G
Sbjct: 769 LTGDVSKAILNVTQGDEMQHIENKWFMKQNDCPD---PKTALSSNRLSLRSFWGLFLIAG 825

Query: 79  CISTLMLMIRFSMSILAN 96
             S L L+I   + +  N
Sbjct: 826 IASFLALLIFVFLFLYEN 843



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,828,754
Number of extensions: 99034
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)