BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0186900 Os06g0186900|AK105241
(476 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G67630.1 | chr5:26967535-26969306 REVERSE LENGTH=470 733 0.0
AT3G49830.1 | chr3:18482383-18483940 FORWARD LENGTH=474 674 0.0
AT5G22330.1 | chr5:7391026-7394071 REVERSE LENGTH=459 332 3e-91
>AT5G67630.1 | chr5:26967535-26969306 REVERSE LENGTH=470
Length = 469
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/481 (74%), Positives = 408/481 (84%), Gaps = 19/481 (3%)
Query: 1 MAELKRLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLI 60
MAELK LSESRDLTR+ERIGAHSHIRGLGLDS+LE R SEGMVGQ+ AR+AAG+ILQ+I
Sbjct: 1 MAELK-LSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMI 59
Query: 61 RQGKIAGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAF 120
R+GKIAGRA+L+AGQPGTGKTA+AMG+AKSLG ETPFA +A SE+FSL++SKTEALTQ+F
Sbjct: 60 REGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSF 119
Query: 121 RRSIGVRXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXKTGRLTLKTTDMET 180
R++IGVR DR K+G++T+KTTDMET
Sbjct: 120 RKAIGVRIKEETEVIEGEVVEVQIDRPASSGVAS------------KSGKMTMKTTDMET 167
Query: 181 VYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEG 240
VY++G KMIEAL KEKVQSGDV+A+DKA+GK+TKLGRS RSRDYDA+G TKFV+CPEG
Sbjct: 168 VYDMGAKMIEALNKEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEG 227
Query: 241 ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAE 300
ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIR+EVREQIDTKVAEWREEGKAE
Sbjct: 228 ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAE 287
Query: 301 IVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPPDF 360
IVPGVLFIDEVHMLDIECFSFLNRALEN+M+PILV+ATNRG+T+IRGTN +SPHGIP D
Sbjct: 288 IVPGVLFIDEVHMLDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGIPIDL 347
Query: 361 LDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITSAA 420
LDRLLIITTQPYT+DDIRKIL+IRC EEDVEM+ +AK LLT IG +TSLRYAIHLIT+AA
Sbjct: 348 LDRLLIITTQPYTDDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAA 407
Query: 421 LACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMF------NEVPGEAGDDAM 474
L+CQKRKGKVVE+EDI RVY+LFLDV+RS QYL+EYQSQYMF +E E DAM
Sbjct: 408 LSCQKRKGKVVEVEDIQRVYRLFLDVRRSMQYLVEYQSQYMFSEPIKNDEAAAEDEQDAM 467
Query: 475 Q 475
Q
Sbjct: 468 Q 468
>AT3G49830.1 | chr3:18482383-18483940 FORWARD LENGTH=474
Length = 473
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/466 (71%), Positives = 384/466 (82%), Gaps = 13/466 (2%)
Query: 1 MAELKRLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLI 60
MAEL RLSE+RDLTRIERIGAHSHIRGLGLDS LE R SEGMVGQ+ AR+AAG+ L+LI
Sbjct: 1 MAEL-RLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELI 59
Query: 61 RQGKIAGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAF 120
R GKI+GRA+L+AGQPGTGK A+AMGIAKSLG ETPF +A SE+FSL++SKTEALTQAF
Sbjct: 60 RDGKISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAF 119
Query: 121 RRSIGVRXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXKTGRLTLKTTDMET 180
R++IGVR DR KTG++T+KTTDME+
Sbjct: 120 RKAIGVRIKEETDVIEGEVVTISIDRPASSGGSVK-----------KTGKITMKTTDMES 168
Query: 181 VYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEG 240
++LG K+IE L KEKVQSGDV+ LD+ GK+TKLGRS RSRD+D +G TKFV+CPEG
Sbjct: 169 NFDLGWKLIEPLDKEKVQSGDVIVLDRFCGKITKLGRSFTRSRDFDVMGSKTKFVQCPEG 228
Query: 241 ELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKVAEWREEGKAE 300
EL+KRKEV+H VTLHEIDVINSRTQG+LALFTGDTGEIR+E REQ DTKVAEWREEGKAE
Sbjct: 229 ELEKRKEVLHSVTLHEIDVINSRTQGYLALFTGDTGEIRSETREQSDTKVAEWREEGKAE 288
Query: 301 IVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPPDF 360
IVPGVLFIDEVHMLDIECFSFLNRALENDM+PILV+ATNRG+T+IRGTN S HGIP DF
Sbjct: 289 IVPGVLFIDEVHMLDIECFSFLNRALENDMSPILVVATNRGMTTIRGTNQISAHGIPIDF 348
Query: 361 LDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITSAA 420
LDRLLIITTQPYT+D+IR IL+IRC EEDVEM+ +AK LLT IG TSLRYAIHLI +AA
Sbjct: 349 LDRLLIITTQPYTQDEIRNILEIRCQEEDVEMNEEAKQLLTLIGCNTSLRYAIHLINAAA 408
Query: 421 LACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYMFNEVP 466
LAC KRKGKVVE++DI RVY+LFLD KRS QYL+E++S+Y+F+ VP
Sbjct: 409 LACLKRKGKVVEIQDIERVYRLFLDTKRSMQYLVEHESEYLFS-VP 453
>AT5G22330.1 | chr5:7391026-7394071 REVERSE LENGTH=459
Length = 458
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/463 (39%), Positives = 279/463 (60%), Gaps = 17/463 (3%)
Query: 6 RLSESRDLTRIERIGAHSHIRGLGLDSSLEARGSSEGMVGQLPARRAAGLILQLIRQGKI 65
++ E + + +RI H+HI+GLGL+ + + G VGQL AR AAGL++ +I+Q K+
Sbjct: 5 KIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKKM 64
Query: 66 AGRAVLLAGQPGTGKTALAMGIAKSLGAETPFASVAASELFSLDLSKTEALTQAFRRSIG 125
AG+A+LLAG PGTGKTALA+GI++ LG++ PF + SE++S ++ KTE L + FRR+IG
Sbjct: 65 AGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIG 124
Query: 126 VRXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXKTGRLTLKTTDMETVYELG 185
+R + +TLKT +L
Sbjct: 125 LRIKETKEVYEGEVTELSPEETESLTGGYGKSISHVV--------ITLKTVKGTKHLKLD 176
Query: 186 GKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGPHTKFVKCPEGELQKR 245
+ +AL KEKV GDV+ ++ SG V ++GRS + ++D ++V P+GE+ K+
Sbjct: 177 PTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEA--EEYVPLPKGEVHKK 234
Query: 246 KEVVHCVTLHEIDVINSRTQG---FLALF----TGDTGEIRAEVREQIDTKVAEWREEGK 298
KE+V VTL ++D N+R QG L+L EI ++R++I+ V + +EG
Sbjct: 235 KEIVQDVTLQDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGV 294
Query: 299 AEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNYRSPHGIPP 358
AE+VPGVLFIDEVHMLD+ECFS+LNRALE+ ++PI++ ATNRG+ ++RGT+ SPHG+P
Sbjct: 295 AELVPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGVCNVRGTDMPSPHGVPI 354
Query: 359 DFLDRLLIITTQPYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLITS 418
D LDRL+II TQ Y ++ +I+ IR E++ + + VLL +IG TSLR+A+ L++
Sbjct: 355 DLLDRLVIIRTQIYDPSEMIQIIAIRAQVEELTVDEECLVLLGEIGQRTSLRHAVQLLSP 414
Query: 419 AALACQKRKGKVVEMEDISRVYQLFLDVKRSTQYLMEYQSQYM 461
A++ + + DI V L+LD K S + L E Q +Y+
Sbjct: 415 ASIVAKMNGRDNICKADIEEVTSLYLDAKSSAKLLHEQQEKYI 457
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,492,106
Number of extensions: 332689
Number of successful extensions: 1178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 4
Length of query: 476
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 374
Effective length of database: 8,310,137
Effective search space: 3107991238
Effective search space used: 3107991238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)