BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0186600 Os06g0186600|AK099819
(472 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24100.1 | chr2:10244921-10246715 FORWARD LENGTH=467 384 e-107
AT4G30780.1 | chr4:14990523-14992855 FORWARD LENGTH=590 369 e-102
AT3G05770.1 | chr3:1710328-1712165 REVERSE LENGTH=411 134 1e-31
AT1G54300.1 | chr1:20270810-20272009 FORWARD LENGTH=315 121 7e-28
>AT2G24100.1 | chr2:10244921-10246715 FORWARD LENGTH=467
Length = 466
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 227/472 (48%), Positives = 286/472 (60%), Gaps = 71/472 (15%)
Query: 5 VLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTSTAGE 64
+L+EPSPLGL L+KSPS +LI+M+LSQ S DD +S KK+ G E
Sbjct: 58 LLEEPSPLGLSLKKSPSFQELIEMKLSQ--------SGDDSNS--VKKESFGFGGVGTVE 107
Query: 65 RLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLKSKIEIQWSDITA 124
+LKASNFPA ILRIG WEY SRYEGDLVAKCYFAKHKLVWEVLE GLKSKIEIQWSDI A
Sbjct: 108 KLKASNFPATILRIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMA 167
Query: 125 LKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQASMNRRHFLQCPS 184
LKA+ PE+ GTL +VLAR PLFF+ET+PQPRKHTLWQATSDFT GQASMNR+HFLQCP
Sbjct: 168 LKANLPEDEPGTLTIVLARRPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCPP 227
Query: 185 SLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFEPRCSIFEDPVESKCQGFTNLKDEHEL 244
+++K+FEKL+QCD RL LS+QP+I L +P F+ R SIFEDP +
Sbjct: 228 GIMNKHFEKLVQCDHRLFCLSRQPEINLAAPFFDSRLSIFEDP---------------SV 272
Query: 245 SGFSGSLSPCAGSSMSAKIEVNDSIATQAGFLAQPGNPGPSAVNVQGV-----SRNVNGA 299
SG SP S S + ++ + + + A ++GV SRN NG
Sbjct: 273 SGSHNIASPVGAQSSSEHVSLSHDALSPSSVM--------DARAIEGVGGSIDSRNTNG- 323
Query: 300 PELNIPSWWSQLKVPGLRPSMSVDDLVNHLGNCISEQITSVNPTLPSNEVPTKETLEEIA 359
WSQ+K+PGL S+S++D + L + E + EE+
Sbjct: 324 --------WSQIKMPGLHQSISMNDFLTFLSDQACE---------------NNQEFEEMK 360
Query: 360 QYLLGD-AQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPNDSDS-IGGDGTEG 417
Q LL D Q P SDE+S+M++V+S C L+Q + +Q E D++ +G D
Sbjct: 361 QLLLSDNTQTDP---SDEKSVMSKVNSFCNLLQ--SAANSQLNIETADTERVVGVDNNRH 415
Query: 418 SDEEFSSAASTVKTTGPAQPPAMSRKDSFGDLLMNLPRIASLPQFLFKIPED 469
E ++ P Q MSRKDSF DLL++LPRI SLP+FLF I E+
Sbjct: 416 MPEGGKRVVDPASSSKPLQ--GMSRKDSFSDLLVHLPRITSLPKFLFNISEE 465
>AT4G30780.1 | chr4:14990523-14992855 FORWARD LENGTH=590
Length = 589
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/528 (43%), Positives = 296/528 (56%), Gaps = 69/528 (13%)
Query: 3 HNVLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTSTA 62
+N LDEPSPLGL L+KSPSLL+LIQM+++ + + K++ K+ + A
Sbjct: 63 YNPLDEPSPLGLSLKKSPSLLELIQMKITHCGDPKAAETLKAGALGSGLKRESKTIAAAA 122
Query: 63 G----------ERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEGGLK 112
E+LKASNFPA++L+IG WEY SRYEGDLVAKCYFAKHKLVWEVLE GLK
Sbjct: 123 SVGPTLAPGSIEKLKASNFPASLLKIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLK 182
Query: 113 SKIEIQWSDITALKASCPENGQGTLDVVLARPPLFFKETDPQPRKHTLWQATSDFTGGQA 172
SKIEIQWSDI ALKA+CPE+G GTL +VLAR PLFF+ET+PQPRKHTLWQATSDFT GQA
Sbjct: 183 SKIEIQWSDIMALKANCPEDGPGTLTLVLARQPLFFRETNPQPRKHTLWQATSDFTDGQA 242
Query: 173 SMNRRHFLQCPSSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFEPRCSIFEDPVESKC 232
SMNR+HFLQC +++K+FEKL+QCD RL LS+QP+I +DSP F+ R SIFEDP ESK
Sbjct: 243 SMNRQHFLQCAQGIMNKHFEKLVQCDHRLFHLSRQPEIAIDSPYFDARQSIFEDPSESKG 302
Query: 233 QGFTNLKDEH--ELSGFSGSLSPCAGSSMSAKIEVNDSIATQAGFL---AQPGNPGPSAV 287
F NL +SG SP S S + ++ + + + A G G AV
Sbjct: 303 HPFGNLNLSTGPSISGTQNLASPVGAQSSSEHMYLSHEAPSPSSVIDARANEGIGGSEAV 362
Query: 288 NVQGVSRNVNGAPELNIPSWWSQLK----------------------VPGLRPSMSVDDL 325
N SRN ++ P + V GL SMSV D
Sbjct: 363 N----SRNRTDCGQIEAPGIHQSMSLSDFLAVLCDTKNTTDLNLADDVDGLHQSMSVSDF 418
Query: 326 VNHLGN-------------------CISEQITSVNPTLPSNEVPTKETLEEIAQYLLGDA 366
V +L + +S+ + ++ + + E E + Q LL D
Sbjct: 419 VAYLSDSRNITDSDQIKVPGLHQSMSVSDFVGLLSDSAGGSHPEHMEKFEIMKQQLLSDN 478
Query: 367 QGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPNDSDSIGGDG-----TEGSDEE 421
A DE+SLM RV+SL L+ KD P + N S+G ++
Sbjct: 479 IQFEA--PDEKSLMPRVNSLFNLLYKD--PNVAANSQLNTEMSVGLKSEPKGIVSDNNNN 534
Query: 422 FSSAASTVKTTGPAQPPAMSRKDSFGDLLMNLPRIASLPQFLFKIPED 469
++ + T ++P M RKDSF DLL++LPRI SLP+FL I E+
Sbjct: 535 NNNNNRVLDTASSSKPQGMLRKDSFSDLLLHLPRITSLPKFLSNISEE 582
>AT3G05770.1 | chr3:1710328-1712165 REVERSE LENGTH=411
Length = 410
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 127/229 (55%), Gaps = 26/229 (11%)
Query: 3 HN-VLDEPSPLGLRLRKSPSLLDLIQMRLSQANSTAGQSSADDCSSEPPKKKDLKSGTST 61
HN +DE L L L K+P L++ I+ L + C P ++ + S TST
Sbjct: 16 HNRFVDEGPRLNLPLTKTPELINKIESYLKVHYT---------C---PHQQTENSSKTST 63
Query: 62 ---AGERLKASNFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEG-------GL 111
+ E+LKA NFP + ++IG ++++ D+VAK YFAK KL+WE L G L
Sbjct: 64 LPKSPEKLKAMNFPISTIKIGDCVFVAKNPDDIVAKFYFAKKKLLWEFLFGEPVANMPRL 123
Query: 112 KSKIEIQWSDITALKASCPENGQ-GTLDVVLARPPLFFKETDPQPRKHTLW-QATSDFTG 169
KSKIEIQW+D+++ + S + G L + L + P FF ET+PQ KHT W Q DFTG
Sbjct: 124 KSKIEIQWNDVSSFEESINSRDETGILKIELKKRPTFFTETNPQAGKHTQWKQLDYDFTG 183
Query: 170 GQASMNRRHFLQCPSSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFE 218
QAS RRH L P +L KN EKLL D ++L + P + +S F+
Sbjct: 184 DQASYYRRHTLHFPPGVLQKNLEKLL-TDSFWSKLYKVPFPVHESLYFD 231
>AT1G54300.1 | chr1:20270810-20272009 FORWARD LENGTH=315
Length = 314
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 92/158 (58%), Gaps = 10/158 (6%)
Query: 70 NFPANILRIGTWEYISRYEGDLVAKCYFAKHKLVWEVLEG-------GLKSKIEIQWSDI 122
NFP + +RIG W +++ D+VAK YFAK KL+WE L G LK KIEIQW+D+
Sbjct: 2 NFPISTIRIGGWVVVAKNPDDIVAKFYFAKKKLIWEFLFGEPETNTLRLKRKIEIQWNDV 61
Query: 123 TALKASCPENGQ-GTLDVVLARPPLFFKETDPQPRKHTLW-QATSDFTGGQASMNRRHFL 180
++ + S + G L + L + P FF ET+PQ KHT W Q DFTG AS RRH L
Sbjct: 62 SSFEESISSRDETGILKIELKKRPTFFIETNPQAGKHTQWKQLDHDFTGDHASNYRRHTL 121
Query: 181 QCPSSLLSKNFEKLLQCDQRLNQLSQQPDIILDSPVFE 218
P +L KN EKL+ D ++L + P + +S F+
Sbjct: 122 HFPPGVLQKNLEKLV-TDSFWSKLYEVPFPVHESRYFD 158
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,418,398
Number of extensions: 518970
Number of successful extensions: 1220
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1205
Number of HSP's successfully gapped: 5
Length of query: 472
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 370
Effective length of database: 8,310,137
Effective search space: 3074750690
Effective search space used: 3074750690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)