BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0184800 Os06g0184800|AK121018
(76 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28088.1 | chr4:13961244-13961560 REVERSE LENGTH=78 72 7e-14
AT4G30650.1 | chr4:14954403-14954698 FORWARD LENGTH=74 72 8e-14
AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76 71 1e-13
AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75 70 2e-13
AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55 64 2e-11
AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55 60 2e-10
AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55 60 3e-10
AT1G57550.1 | chr1:21312541-21312809 REVERSE LENGTH=53 55 5e-09
>AT4G28088.1 | chr4:13961244-13961560 REVERSE LENGTH=78
Length = 77
Score = 71.6 bits (174), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 7 CLEILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIV 55
C EI+ AIL+PPLGVCLRHGCCT EF I ++LT+LGY+PG++YA+Y IV
Sbjct: 8 CCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIV 56
>AT4G30650.1 | chr4:14954403-14954698 FORWARD LENGTH=74
Length = 73
Score = 71.6 bits (174), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 43/47 (91%)
Query: 9 EILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIV 55
EIL AILLPPLGVCL+ GCCT+EF I ++LTILGY+PG++YA+YVIV
Sbjct: 10 EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56
>AT2G24040.1 | chr2:10224028-10224531 FORWARD LENGTH=76
Length = 75
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 7 CLEILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVI 54
C EI AILLPP+GVCLRHGCCT+EF+I ++LT LGYLPG++YA+Y I
Sbjct: 8 CCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55
>AT4G30660.1 | chr4:14955470-14955944 FORWARD LENGTH=75
Length = 74
Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 9 EILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIV 55
EI+ AILLPPLGVC R GCCT+EF I ++LTILGY+PG++YA+YVIV
Sbjct: 10 EIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56
>AT2G38905.1 | chr2:16244218-16244472 REVERSE LENGTH=55
Length = 54
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
Query: 8 LEILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIVS 56
LEI+ AILLPP+GV LR+GC +EFWI +LLTILGY+PG++YA+YV+V
Sbjct: 7 LEIILAILLPPVGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLVG 54
>AT3G05890.1 | chr3:1758179-1758452 REVERSE LENGTH=55
Length = 54
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 9 EILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIVS 56
EI+ AI+LPPLGV L+ GC +EFWI ++LT+ GYLPG+LYA+Y+I
Sbjct: 8 EIILAIILPPLGVFLKFGC-KVEFWICLILTLFGYLPGILYALYIITK 54
>AT3G05880.1 | chr3:1756195-1756494 REVERSE LENGTH=55
Length = 54
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
Query: 9 EILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIVS 56
+I+ AILLPPLGV LR GC +EFWI ++LT+LGY+PG++YA+YV+
Sbjct: 8 DIIIAILLPPLGVFLRFGCG-VEFWICLVLTLLGYIPGIIYAIYVLTK 54
>AT1G57550.1 | chr1:21312541-21312809 REVERSE LENGTH=53
Length = 52
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 8 LEILCAILLPPLGVCLRHGCCTMEFWISVLLTILGYLPGVLYAVYVIVS 56
LE+LCAI +PP+GV LR+G +EFW+ +LLT+ ++PG++YA+YV+
Sbjct: 5 LEVLCAIFIPPVGVFLRYGL-GLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.339 0.153 0.563
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,376,365
Number of extensions: 39107
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 8
Length of query: 76
Length of database: 11,106,569
Length adjustment: 48
Effective length of query: 28
Effective length of database: 9,790,601
Effective search space: 274136828
Effective search space used: 274136828
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 104 (44.7 bits)