BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0182400 Os06g0182400|AK068745
         (325 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58200.2  | chr5:23549605-23551972 FORWARD LENGTH=310          330   7e-91

>AT5G58200.2 | chr5:23549605-23551972 FORWARD LENGTH=310
          Length = 309

 Score =  330 bits (845), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 164/306 (53%), Positives = 216/306 (70%), Gaps = 17/306 (5%)

Query: 18  DVHNDWTLEEDSKALHFLQPDLVLFTGDYGNENVQLVKSISDLQLPKAAILGNHDCWHTY 77
           D+H  W L+ED KAL  LQPDLVLFTGD+G ENV LV+S++ L  PKA ILGNHD W T 
Sbjct: 14  DIHGFWNLDEDRKALRVLQPDLVLFTGDFGEENVPLVQSVAALTFPKAVILGNHDAWFTQ 73

Query: 78  QFSEK---KVDRVQLQLESLGEQHVGYKCLDFPTIKLSVVGGRPFSCGGNRIFRPKLLSK 134
            F  K   K + VQ+QL+ LG++H+GY+ +DFP+ KLS+VGGRPFS GG+R+FR  LL +
Sbjct: 74  DFPRKEKQKQNGVQMQLDILGDEHIGYQRMDFPSFKLSIVGGRPFSHGGDRLFRKNLLVQ 133

Query: 135 WYGVNDMAESAKRIYDAATNAPKEHAVILLAHNGPTGLGSRMEDICGRDWVAGGGDHGDP 194
            YGV+DM  SA  I  AA   P++H  I+LAHNGPTGLG + EDICG+DW A GGDHGDP
Sbjct: 134 RYGVHDMEASAGSICRAAHGTPEDHVAIILAHNGPTGLGWQAEDICGKDWGAEGGDHGDP 193

Query: 195 DLEQAISDLQRETGVSIPLVVFGHMHKSLAYGRGLRKMIAFGA-NRTIYLNGAVVPRVNH 253
           DLEQAI  L+  T +SIPLVVFGHMHK L  G+G RKM+   + N+T+Y+NGA+VPRV  
Sbjct: 194 DLEQAIRQLKETTKLSIPLVVFGHMHKELQRGKGNRKMVVQDSDNQTVYVNGAIVPRVKE 253

Query: 254 AQSSRQPAISTSEKTGLEGLTGLMVPTSRAFTIVDLFEGAVEKISEVWVTVGDARTELEQ 313
           A   ++   + SE  G          T+RAFT+V++ +G ++KI+E+WV V  +  ++ +
Sbjct: 254 A---KKRGAAESESGG----------TTRAFTLVEILDGKIKKIAEIWVHVNGSMAKIVE 300

Query: 314 ELVLYK 319
           E  L++
Sbjct: 301 ENTLFE 306



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,925,953
Number of extensions: 289793
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)