BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0179000 Os06g0179000|AK065263
(526 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G34940.2 | chr5:13235912-13238718 REVERSE LENGTH=537 606 e-173
AT5G61250.2 | chr5:24632294-24634597 REVERSE LENGTH=540 513 e-145
AT5G07830.1 | chr5:2504168-2506567 FORWARD LENGTH=544 496 e-140
>AT5G34940.2 | chr5:13235912-13238718 REVERSE LENGTH=537
Length = 536
Score = 606 bits (1562), Expect = e-173, Method: Compositional matrix adjust.
Identities = 282/494 (57%), Positives = 357/494 (72%), Gaps = 10/494 (2%)
Query: 41 DEDFVCATMDWWPPDKCDYGTCSWGLASXXXXXXXXXXXXXAIRGTFSPLKLRLGGSLQD 100
DEDF+CAT+DWWPP+KCDYG+CSW AS AI+ F+PLK+R+GG+LQD
Sbjct: 45 DEDFICATLDWWPPEKCDYGSCSWDHASILNLDLNNVILQNAIKA-FAPLKIRIGGTLQD 103
Query: 101 KLVYGTGDGGGPCAPFVKNTSEMFGFTQGCLPLHRWDELNAFFQKSGARIVFGLNALNGR 160
++Y T D PC PF KN+S +FG+TQGCLP+ RWDELNAFF+K+G +++FGLNAL+GR
Sbjct: 104 IVIYETPDSKQPCLPFTKNSSILFGYTQGCLPMRRWDELNAFFRKTGTKVIFGLNALSGR 163
Query: 161 VPLPDGSMGGPWDYTNAASLIRYTASKGYKIHGWELGNELSGSGVGTKVGADQYAADVIA 220
+G G W+YTNA S IR+TA Y I GWELGNEL GSGVG +VGA+QYA D I
Sbjct: 164 SIKSNGEAIGAWNYTNAESFIRFTAENNYTIDGWELGNELCGSGVGARVGANQYAIDTIN 223
Query: 221 LKSLVDTIYQGNPSKPLVLAPGGFFDAGWFTEVIVKTRPNLLNVVTHHIYNLGPGVDTHL 280
L+++V+ +Y+ PLV+ PGGFF+ WFTE + K N LN T HIY+LGPGVD HL
Sbjct: 224 LRNIVNRVYKNVSPMPLVIGPGGFFEVDWFTEYLNKAE-NSLNATTRHIYDLGPGVDEHL 282
Query: 281 IEKILNPSYLDGMVSTFSNLQGILKSAGTSAVAWVGESGGAYNSGRHLVTDSFVFSFWFL 340
IEKILNPSYLD +F +L+ I+K++ T AVAWVGESGGAYNSGR+LV+++FV+SFW+L
Sbjct: 283 IEKILNPSYLDQEAKSFRSLKNIIKNSSTKAVAWVGESGGAYNSGRNLVSNAFVYSFWYL 342
Query: 341 DQLGMSAKYDTKSYCRQSLIGGNYGLLNKETFQPNPDYYSALLWHRLMGTKVLSATFNGT 400
DQLGM++ YDTK+YCRQSLIGGNYGLLN F PNPDYYSAL+W +LMG K L TF+GT
Sbjct: 343 DQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYYSALIWRQLMGRKALFTTFSGT 402
Query: 401 NMIRTYAHCAKDSPGITLLLINLSGNTTSQVSVTSEGA----HANTVKKHSRKTRHLAAG 456
IR+Y HCA+ S GIT+LL+NL TT V + H +K + R + L G
Sbjct: 403 KKIRSYTHCARQSKGITVLLMNLDNTTTVVAKVELNNSFSLRHTKHMKSYKRASSQLFGG 462
Query: 457 S----MREEYHLTAKDGSLQSQVMLLNGRALVADENGEIPRLEPVKVDAAQPIAVAPYSI 512
REEYHLTAKDG+L SQ MLLNG AL + G++P +EP+ +++ +PI +APYSI
Sbjct: 463 PNGVIQREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSI 522
Query: 513 VFAHIHNFPAPACS 526
VF H+ N PAC+
Sbjct: 523 VFVHMRNVVVPACA 536
>AT5G61250.2 | chr5:24632294-24634597 REVERSE LENGTH=540
Length = 539
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/502 (49%), Positives = 336/502 (66%), Gaps = 17/502 (3%)
Query: 40 TDEDFVCATMDWWPPDKCDYGTCSWGLASXXXXXXXXXXXXXAIRGTFSPLKLRLGGSLQ 99
TDE+F+CAT+DWWPP+KC+Y C WG AS AI+ F L++R+GGSLQ
Sbjct: 40 TDENFICATLDWWPPEKCNYDQCPWGYASLINLNLASPLLAKAIQA-FRTLRIRIGGSLQ 98
Query: 100 DKLVYGTGDGGGPCAPFVKNTSEMFGFTQGCLPLHRWDELNAFFQKSGARIVFGLNALNG 159
D+++Y GD PC F K +FGF++GCL + RWDE+N FF +GA + FGLNAL+G
Sbjct: 99 DQVIYDVGDLKTPCTQFKKTDDGLFGFSEGCLYMKRWDEVNHFFNATGAIVTFGLNALHG 158
Query: 160 RVPLPDGSMGGPWDYTNAASLIRYTASKGYKIHGWELGNELSGSGVGTKVGADQYAADVI 219
R L + GG WD+TN + YT SKGY I WE GNELSGSG+ V + Y D+I
Sbjct: 159 RNKLNGTAWGGDWDHTNTQDFMNYTVSKGYAIDSWEFGNELSGSGIWASVSVELYGKDLI 218
Query: 220 ALKSLVDTIYQGNPSKPLVLAPGGFFDAGWFTEVIVKTRPNLLNVVTHHIYNLGPGVDTH 279
LK+++ +Y+ + +KPLV+APGGFF+ W++E++ + P +L+V+THHIYNLGPG D
Sbjct: 219 VLKNVIKNVYKNSRTKPLVVAPGGFFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPK 278
Query: 280 LIEKILNPSYLDGMVSTFSNLQGILKSAGTSAVAWVGESGGAYNSGRHLVTDSFVFSFWF 339
L+ KIL+P+YL G+ F+N+ ++ G A AWVGE+GGA+NSG V+++F+ SFW+
Sbjct: 279 LVNKILDPNYLSGISELFANVNQTIQEHGPWAAAWVGEAGGAFNSGGRQVSETFINSFWY 338
Query: 340 LDQLGMSAKYDTKSYCRQSLIGGNYGLLNKETFQPNPDYYSALLWHRLMGTKVLSATFNG 399
LDQLG+S+K++TK YCRQ+L+GG YGLL KETF PNPDYYSALLWHRLMG +L
Sbjct: 339 LDQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPNPDYYSALLWHRLMGKGILGVQTTA 398
Query: 400 TNMIRTYAHCAKDSPGITLLLINLSGNTTSQVSVTSEGA----HANTVKKHSR----KTR 451
+ +R Y HC+K GIT+LLINLS +TT V+V S G A ++K+ S K++
Sbjct: 399 SEYLRAYVHCSKRRAGITILLINLSKHTTFTVAV-SNGVKVVLQAESMKRKSFLETIKSK 457
Query: 452 HLAAGSM-------REEYHLTAKDGSLQSQVMLLNGRALVADENGEIPRLEPVKVDAAQP 504
G+ REEYHL+ KDG L+S++MLLNG+ LV G+IP+LEPV+ P
Sbjct: 458 VSWVGNKASDGYLNREEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPVRHGVKSP 517
Query: 505 IAVAPYSIVFAHIHNFPAPACS 526
+ + P SI F + F APACS
Sbjct: 518 VYINPLSISFIVLPTFDAPACS 539
>AT5G07830.1 | chr5:2504168-2506567 FORWARD LENGTH=544
Length = 543
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 331/504 (65%), Gaps = 20/504 (3%)
Query: 40 TDEDFVCATMDWWPPDKCDYGTCSWGLASXXXXXXXXXXXXXAIRGTFSPLKLRLGGSLQ 99
TDE+FVCAT+DWWP DKC+Y C WG +S AI+ F PL++R+GGSLQ
Sbjct: 43 TDENFVCATLDWWPHDKCNYDQCPWGYSSVINMDLTRPLLTKAIKA-FKPLRIRIGGSLQ 101
Query: 100 DKLVYGTGDGGGPCAPFVKNTSEMFGFTQGCLPLHRWDELNAFFQKSGARIVFGLNALNG 159
D+++Y G+ PC PF K S +FGF++GCL + RWDELN+F +GA + FGLNAL G
Sbjct: 102 DQVIYDVGNLKTPCRPFQKMNSGLFGFSKGCLHMKRWDELNSFLTATGAVVTFGLNALRG 161
Query: 160 RVPLPDGSMGGPWDYTNAASLIRYTASKGYKIHGWELGNELSGSGVGTKVGADQYAADVI 219
R L + GG WD+ N + YT SKGY I WE GNELSGSGVG V A+ Y D+I
Sbjct: 162 RHKLRGKAWGGAWDHINTQDFLNYTVSKGYVIDSWEFGNELSGSGVGASVSAELYGKDLI 221
Query: 220 ALKSLVDTIYQGN-PSKPLVLAPGGFFDAGWFTEVIVKTRPNLLNVVTHHIYNLGPGVDT 278
LK +++ +Y+ + KP+++APGGF++ W+T+++ + P++++VVTHHIYNLG G D
Sbjct: 222 VLKDVINKVYKNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDP 281
Query: 279 HLIEKILNPSYLDGMVSTFSNLQGILKSAGTSAVAWVGESGGAYNSGRHLVTDSFVFSFW 338
L++KI++PSYL + TF ++ ++ G A WVGESGGAYNSG V+D+F+ SFW
Sbjct: 282 ALVKKIMDPSYLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFW 341
Query: 339 FLDQLGMSAKYDTKSYCRQSLIGGNYGLLNKETFQPNPDYYSALLWHRLMGTKVLSATFN 398
+LDQLGMSA+++TK YCRQ+L+GG YGLL K TF PNPDYYSALLWHRLMG VL+ +
Sbjct: 342 YLDQLGMSARHNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTD 401
Query: 399 GTNMIRTYAHCAKDSPGITLLLINLSGNTTSQVSVTSEGAHANTVKKHSRKTRHLA---- 454
G +R YAHC+K G+TLLLINLS + VSV S G + + SRK + L
Sbjct: 402 GPPQLRVYAHCSKGRAGVTLLLINLSNQSDFTVSV-SNGINV-VLNAESRKKKSLLDTLK 459
Query: 455 -----AGSM-------REEYHLTAKDGSLQSQVMLLNGRALVADENGEIPRLEPVKVDAA 502
GS REEYHLT ++G L+S+ M+LNG++L G+IP LEPV
Sbjct: 460 RPFSWIGSKASDGYLNREEYHLTPENGVLRSKTMVLNGKSLKPTATGDIPSLEPVLRSVN 519
Query: 503 QPIAVAPYSIVFAHIHNFPAPACS 526
P+ V P S+ F + NF A ACS
Sbjct: 520 SPLNVLPLSMSFIVLPNFDASACS 543
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,115,607
Number of extensions: 483203
Number of successful extensions: 908
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 3
Length of query: 526
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 423
Effective length of database: 8,282,721
Effective search space: 3503590983
Effective search space used: 3503590983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)