BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0168000 Os06g0168000|AK099356
         (337 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19080.1  | chr2:8262818-8264746 FORWARD LENGTH=316            252   2e-67

>AT2G19080.1 | chr2:8262818-8264746 FORWARD LENGTH=316
          Length = 315

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/306 (43%), Positives = 194/306 (63%), Gaps = 11/306 (3%)

Query: 19  VLVARKAAFGLPTACPTCLPVLLYLRMCNVPFDIHVDSSFPDADHIPYVEFGECVAFNNE 78
            LVARK +F LPTACP CLP  +YL++  +PF++  +S+FPD+D +PY E    VA+NNE
Sbjct: 11  TLVARKPSFDLPTACPNCLPAYIYLKLAQLPFELAFNSTFPDSDELPYFESDTYVAYNNE 70

Query: 79  KGGVIEYLKEEKIVDLNSKHPSVSYSDVLSTKAMVMTWLSDALQYELWLASDGSIPHDIY 138
            GGVIE LK++ IV+L+S+  S+S  D LS KA++++WL +AL YE+W+ ++G     IY
Sbjct: 71  DGGVIEKLKKDGIVNLDSQLQSLS--DYLSLKALIVSWLEEALTYEIWVGTEGISTSKIY 128

Query: 139 FSDLSWPIGKILYWKKTREVKQQLGITKLNAAEKEEEIYQKANAAYDALSTRLGDQIFLF 198
           +SDL W I K+L++K+T   K +LGITK NA ++E++IY++A+ AY+ALSTRLG+Q FLF
Sbjct: 129 YSDLPWVISKVLFYKQTYLAKNRLGITKENAEQREKQIYKRASEAYEALSTRLGEQKFLF 188

Query: 199 DNSPTDVDALFLGHALFVLNVLPDTSVLRSCLQKYDNLVNFTKHLKVQLLEADSDSSATG 258
           ++ P+ +DA  L H LF++  LP TSVLR  L ++ NLV + + LK + LEA S S +  
Sbjct: 189 EDRPSSLDAFLLSHILFIIQALPVTSVLRCKLLEHSNLVRYAEKLKSEFLEASSSSPSPP 248

Query: 259 LGSTDXXXXXXXXXXXXXGRSYXXXXXXXXXXXXXXXXXXXXXXYFLATQLVAVLLFLSL 318
           L S                +                        +FLA Q +AV++++S+
Sbjct: 249 LHSFPSSFPRKSSKPKSKPKV---------EKTEEEKKFKKRARFFLAAQFLAVVIYVSV 299

Query: 319 MGGADS 324
           MGG  S
Sbjct: 300 MGGGSS 305



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,335,216
Number of extensions: 249948
Number of successful extensions: 613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 238
Effective length of database: 8,392,385
Effective search space: 1997387630
Effective search space used: 1997387630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)