BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0158700 Os06g0158700|AK103202
         (124 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64185.1  | chr1:23824527-23825152 FORWARD LENGTH=119          184   8e-48
AT5G41650.1  | chr5:16654956-16655578 FORWARD LENGTH=118          177   1e-45

>AT1G64185.1 | chr1:23824527-23825152 FORWARD LENGTH=119
          Length = 118

 Score =  184 bits (468), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 100/113 (88%)

Query: 12  LRWVLQMHRDVPRAARFYSEGLDFSVNVCTLRWAELQSGPLKLALMHTNDSNLASQRIYS 71
            RW+LQ+HRDVP+AARFY +GLDFSVNV TLRWAELQSGPLKLALM     ++ S++ YS
Sbjct: 6   FRWILQLHRDVPKAARFYEKGLDFSVNVVTLRWAELQSGPLKLALMQAPSEHVMSEKGYS 65

Query: 72  SMLSFTVPDINSTVTKLLSLGAELDGPIKYEIHGKVAAVRCIDGHMLGLFEPA 124
           S+LSFTV DIN+T++KL+ LGAELDG IKYE+HGKVA+VRC+DGH+LGL+EP+
Sbjct: 66  SLLSFTVADINTTISKLMELGAELDGSIKYEVHGKVASVRCLDGHVLGLYEPS 118



>AT5G41650.1 | chr5:16654956-16655578 FORWARD LENGTH=118
          Length = 117

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 100/113 (88%), Gaps = 1/113 (0%)

Query: 12  LRWVLQMHRDVPRAARFYSEGLDFSVNVCTLRWAELQSGPLKLALMHTNDSNLASQRIYS 71
            RW+LQ+HRDVP+AARFY++GLDFSVNV TLRWAEL SGP+KLALM +  SN  +++ YS
Sbjct: 6   FRWILQLHRDVPKAARFYAQGLDFSVNVVTLRWAELHSGPIKLALMQS-PSNHVAEKGYS 64

Query: 72  SMLSFTVPDINSTVTKLLSLGAELDGPIKYEIHGKVAAVRCIDGHMLGLFEPA 124
           S+LSFTV DIN+TVTKL++LGAELDG IKYEIHGKVAA++C DG+MLGL+E A
Sbjct: 65  SLLSFTVTDINTTVTKLMALGAELDGTIKYEIHGKVAAMKCPDGYMLGLYEAA 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,300,985
Number of extensions: 73398
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 38
Effective length of database: 8,748,793
Effective search space: 332454134
Effective search space used: 332454134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)