BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0158600 Os06g0158600|AK101378
         (199 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46230.1  | chr2:18984459-18985850 REVERSE LENGTH=197          301   2e-82
AT1G26530.1  | chr1:9165890-9167298 FORWARD LENGTH=179            226   7e-60
AT2G34570.1  | chr2:14563048-14564681 REVERSE LENGTH=282           55   2e-08

>AT2G46230.1 | chr2:18984459-18985850 REVERSE LENGTH=197
          Length = 196

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/198 (74%), Positives = 163/198 (82%), Gaps = 3/198 (1%)

Query: 1   MGRAKSKGPKFAAVXXXXXXXXXXXXXEDVLNPKKKDNEKEKLGRNVPQVSSALFFSYNT 60
           MG+AK K  KFA V             E+VLNP KKD    +L RNVP V + LFFSYN+
Sbjct: 1   MGKAK-KPQKFAVVKKMISHKALKHYKEEVLNPNKKD--LTELPRNVPSVPAGLFFSYNS 57

Query: 61  ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 120
            L PPYRV+VDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELEKLGQKYRVAL
Sbjct: 58  TLVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVAL 117

Query: 121 RIAKDPRFQRLACTHKGTYADDCIVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITR 180
           RIAKDP F+RL C HKGTYADDC+V+RVTQHKC+IVATCDRDLKRRIRK+PGVPIMY+T 
Sbjct: 118 RIAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTN 177

Query: 181 HRYSIERLPEATIGGAPR 198
            +YSIE+LPEAT+GGAPR
Sbjct: 178 RKYSIEKLPEATLGGAPR 195



>AT1G26530.1 | chr1:9165890-9167298 FORWARD LENGTH=179
          Length = 178

 Score =  226 bits (575), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 120/198 (60%), Positives = 139/198 (70%), Gaps = 21/198 (10%)

Query: 1   MGRAKSKGPKFAAVXXXXXXXXXXXXXEDVLNPKKKDNEKEKLGRNVPQVSSALFFSYNT 60
           MGR K K  KFA +             E+VLNP KKD    +L RNVP V S LFFS+N+
Sbjct: 1   MGRTK-KPQKFAVMKMMISHKALKHYKEEVLNPNKKD--LTELPRNVPSVPSGLFFSHNS 57

Query: 61  ALGPPYRVIVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVAL 120
           +L PPYRV+VDTNFINFSIQNK+DLEKGMM                  + K+   Y    
Sbjct: 58  SLVPPYRVLVDTNFINFSIQNKIDLEKGMM----------------VFVRKMHSLYYGL- 100

Query: 121 RIAKDPRFQRLACTHKGTYADDCIVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITR 180
            IAKDPRF+RL C  KGTYADDC+V+RVTQHKC+IVATCDRDLKRRIRK+PGVPIMY+T+
Sbjct: 101 -IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQ 159

Query: 181 HRYSIERLPEATIGGAPR 198
            +YSIE+LPEATIGGAPR
Sbjct: 160 RKYSIEKLPEATIGGAPR 177



>AT2G34570.1 | chr2:14563048-14564681 REVERSE LENGTH=282
          Length = 281

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 10/133 (7%)

Query: 55  FFSYNTALGPPYRVIVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLG 113
           FF+       PY+V+ D  F++  + N++   +  + + L        T CV+AELEKLG
Sbjct: 15  FFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTRCVIAELEKLG 74

Query: 114 QKYRVALRIAKDPRFQRLACTH-KGTYADDCIVERV----TQHKCYIVATCDRDLKRRIR 168
           + +  +L  A+        C H +   AD+C+ E +    T+H  + + T D + +R+++
Sbjct: 75  KDFAESLEAAQT--LNTATCEHEEAKTADECLSEVIGVQNTEH--FFLGTQDAEFRRKLQ 130

Query: 169 KVPGVPIMYITRH 181
           +   VP+++  R+
Sbjct: 131 QESIVPLVFGLRN 143



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,143,169
Number of extensions: 158366
Number of successful extensions: 315
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 3
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)