BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0154200 Os06g0154200|AK065478
(720 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G42620.1 | chr2:17756170-17758251 FORWARD LENGTH=694 592 e-169
AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611 53 7e-07
AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406 51 2e-06
>AT2G42620.1 | chr2:17756170-17758251 FORWARD LENGTH=694
Length = 693
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 333/709 (46%), Positives = 430/709 (60%), Gaps = 58/709 (8%)
Query: 33 TDVRSRHRAALACGRMRAAERATRSELSLRGDPRSPGFLFLSHAFRFPALEHLDLSLVSP 92
+D R+R+ +L + A ER+TRS L++RG+ R + FR ++ HLDLS +SP
Sbjct: 22 SDSRARNSLSLVSHKFLALERSTRSHLTIRGNARD--LSLVPDCFR--SISHLDLSFLSP 77
Query: 93 WGHPLLXXXXXXXXXXXXXXXXXXXXXMNVYHPEAISEQNAFIAARLAGCFPAVTSLAVY 152
WGH LL I QN +A RL CFP V SL VY
Sbjct: 78 WGHTLLASL-------------------------PIDHQN-LLALRLKFCFPFVESLNVY 111
Query: 153 CRDPTTLANLTPHWQASLRRVKLVRWHQRPPTLPDGADLEPLLETCAA-LRELDLSEFYC 211
R P++L L P W +R +KL+RWHQR +P G D P+ E C L LDLS FY
Sbjct: 112 TRSPSSLELLLPQW-PRIRHIKLLRWHQRASQIPTGGDFVPIFEHCGGFLESLDLSNFYH 170
Query: 212 WTEDVVRALTTHPSATAALTHLDLGLAAATDGFKSSELGPIAASCPNLRKLVAPCLFNPR 271
WTED+ L + A LT LDL A+ T+G+KSSE+ I SCPNL+ C F+PR
Sbjct: 171 WTEDLPPVLLRYADVAARLTRLDLLTASFTEGYKSSEIVSITKSCPNLKTFRVACTFDPR 230
Query: 272 FSDCVGDDALLSLATSCPRLTVLR------LSEPFEAAANIQREEAAITVAGLVAFFAAL 325
+ + VGD+ L ++ATS P+LT+L L+ P A + ++A+T L+ F+ L
Sbjct: 231 YFEFVGDETLSAVATSSPKLTLLHMVDTASLANP-RAIPGTEAGDSAVTAGTLIEVFSGL 289
Query: 326 PALEDFTMDLQHNVLEAAPAMEALARRCPRIKFLTLGSFQGLCKAS-WLHLDGVAVCGGL 384
P LE+ +D+ +V + A+EAL +C +++ L LG FQG+C A+ W LDGVA+CGGL
Sbjct: 290 PNLEELVLDVGKDVKHSGVALEALNSKCKKLRVLKLGQFQGVCSATEWRRLDGVALCGGL 349
Query: 385 ESLYMKNCQDLTDASLAAIGRGCRRLAKFGIHGCDLVTSAGIRRLAFTLRPTLKEVTVLH 444
+SL +KN DLTD L AIGRGC +L F I GC+ VT G+R + TL +V +
Sbjct: 350 QSLSIKNSGDLTDMGLVAIGRGCCKLTTFEIQGCENVTVDGLRTMVSLRSKTLTDVRISC 409
Query: 445 CRLLHTAECLTALSPIRDRIESLEINCVWNTTEQPCSVANGTTTECDPEDDELGEVYESA 504
C+ L TA L A+ PI DRI+ L I+CVW+ +E T+E D E+++ G YE +
Sbjct: 410 CKNLDTAASLKAIEPICDRIKRLHIDCVWSGSEDEEVEGRVETSEADHEEEDDG--YERS 467
Query: 505 AKKCRYMEFDDLGS-------------WEMLRSLSLWFSAGQLLSPLISAGLDSCPVLEE 551
K+C+Y ++ S WE L LSLW + G+ L+PL GLD CP LEE
Sbjct: 468 QKRCKYSFEEEHCSTSDVNGFCSEDRVWEKLEYLSLWINVGEFLTPLPMTGLDDCPNLEE 527
Query: 552 ISIKVEGDCRTCPRPAPRTIFGLSDLAGFPVLAKMKLDLSEAVGYALTAPTGQMDLSLWE 611
I IK+EGDCR RPA FGLS LA +P L+KM+LD + +G+ALTAP QMDLSLWE
Sbjct: 528 IRIKIEGDCRGKRRPAEPE-FGLSCLALYPKLSKMQLDCGDTIGFALTAPPMQMDLSLWE 586
Query: 612 RFYLHGIESLQTLYELDYWPPQDKDVHHRSLTLPAVGLIQRCVGLRKLFIHGTTHEHFMT 671
RF+L GI SL +L ELDYWPPQD+DV+ RSL+LP GL+Q C+ LRKLFIHGT HEHFM
Sbjct: 587 RFFLTGIGSL-SLSELDYWPPQDRDVNQRSLSLPGAGLLQECLTLRKLFIHGTAHEHFMN 645
Query: 672 FFLSIPNLRDMQLREDYYPAPENDLMFTEMRAESWLRFEVQLNSRQIDD 720
F L IPNLRD+QLR DYYPAPEND M TEMR S RFE QLNSR I D
Sbjct: 646 FLLRIPNLRDVQLRADYYPAPEND-MSTEMRVGSCSRFEDQLNSRNIID 693
>AT4G15475.1 | chr4:8845927-8848701 FORWARD LENGTH=611
Length = 610
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 313 ITVAGLVAFFAALPALEDFTMDLQHNVLEAAPAMEALARRCPRIKFLTLGSFQGLCKASW 372
++ GL A LE ++ HN+ +EA+ + CPR+K L L Q + ++
Sbjct: 333 VSCKGLEAIAHGCKELERVEINGCHNI--GTRGIEAIGKSCPRLKELALLYCQRIGNSAL 390
Query: 373 LHLDGVAVCGGLESLYMKNCQDLTDASLAAIGRGCRRLAKFGIHGCDLVTSAGI 426
+ C LE L++ +C + D ++ +I +GCR L K I C + + GI
Sbjct: 391 QEIG--KGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGI 442
>AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406
Length = 405
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 5/158 (3%)
Query: 312 AITVAGLVAFFAALPALEDFTMDLQHNVLEAAPAMEALARRCPRIKFLTLGSFQGLCKAS 371
IT GL + L L+ +D+ + + + A+A C ++ L L + + S
Sbjct: 110 GITDTGLASIGRCLSLLQ--FLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDES 167
Query: 372 WLHLDGVAVCGGLESLYMKNCQDLTDASLAAIGRGCRRLAKFGIHGCDLVTSAGIRRLAF 431
L C LE+L ++ C ++TD+ LA + +GCR++ I+ C V AG+ +A
Sbjct: 168 LKSLS--ERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAK 225
Query: 432 TLRPTLKEVTVLHCRLLHTAECLTALSPIRDRIESLEI 469
+LK + +L C + E +++L+ +E+L I
Sbjct: 226 ACASSLKTLKLLDCYKVGN-ESISSLAQFCKNLETLII 262
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,311,690
Number of extensions: 576823
Number of successful extensions: 1501
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 5
Length of query: 720
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 614
Effective length of database: 8,200,473
Effective search space: 5035090422
Effective search space used: 5035090422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 115 (48.9 bits)