BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0152400 Os06g0152400|AK064640
         (236 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30920.1  | chr2:13157409-13159824 REVERSE LENGTH=323          198   2e-51

>AT2G30920.1 | chr2:13157409-13159824 REVERSE LENGTH=323
          Length = 322

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 122/162 (75%), Gaps = 2/162 (1%)

Query: 66  LNPAEVAHFASFAETWWDTEGPFKHLLVMNPTRVSFIRSILCKHFRRDPNSSKPLEGLKI 125
           LN  E+A F++ A+TWW +EGPFK L  MNPTR++FIRS LC+HF +DP+S+KP EGLK 
Sbjct: 76  LNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKF 135

Query: 126 IDVGCAAGMLSEPLARMGATVTGIDAADESIKIARVHAASDPLTASIEYLCTTAEDLVKE 185
           ID+GC  G+LSEPLARMGATVTG+DA D+++KIAR+HA  DP+T++IEYLCTTAE L  E
Sbjct: 136 IDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE 195

Query: 186 NKQFDAVICLEAAGIIFKTLKFRDSLS--ISERGAFLLSYIS 225
            ++FDAV+ LE    +    +F  SLS      GA +LS I+
Sbjct: 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,890,258
Number of extensions: 141971
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)