BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0152300 Os06g0152300|AK102929
         (327 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30920.1  | chr2:13157409-13159824 REVERSE LENGTH=323          405   e-113

>AT2G30920.1 | chr2:13157409-13159824 REVERSE LENGTH=323
          Length = 322

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 181/241 (75%), Positives = 214/241 (88%)

Query: 79  LNPAEVAKFAAIAETWWDSEGPFKPLHLMNPTRLSFIRSTLCRHFRRDPNSSKPLEGLKV 138
           LN  E+AKF+AIA+TWW SEGPFKPLH MNPTRL+FIRSTLCRHF +DP+S+KP EGLK 
Sbjct: 76  LNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKF 135

Query: 139 IDVGCGGGILSEPLARMGATVTGIDAVDKNIKIARVHAASDPSTASIEYFCTTAEDLVKE 198
           ID+GCGGG+LSEPLARMGATVTG+DAVDKN+KIAR+HA  DP T++IEY CTTAE L  E
Sbjct: 136 IDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE 195

Query: 199 NKQFDAVISLEVIEHVANPSGFCESLSALTVPNGATVISTINRSMRAYATAIVAAEYILN 258
            ++FDAV+SLEVIEHVANP+ FC+SLSALT+PNGATV+STINR+MRAYA+ IV AEYIL 
Sbjct: 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILR 255

Query: 259 WLPKGTHQWSKLVTPEELVLILERASISVQEMAGFVYNPLRGEWSLSDDLTVNYIAYGMK 318
           WLPKGTHQWS  VTPEE+ +IL+RAS+ V+E+AGFVYNP+ G W LSDD++VNYIAYG K
Sbjct: 256 WLPKGTHQWSSFVTPEEMSMILQRASVDVKEIAGFVYNPITGRWLLSDDISVNYIAYGTK 315

Query: 319 K 319
           +
Sbjct: 316 R 316



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,788,509
Number of extensions: 256465
Number of successful extensions: 703
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,392,385
Effective search space: 1913463780
Effective search space used: 1913463780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)