BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0152000 Os06g0152000|J090065M08
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56610.1  | chr5:22916738-22918137 FORWARD LENGTH=229          122   4e-29
AT2G35680.1  | chr2:14997004-14998590 REVERSE LENGTH=338          118   5e-28

>AT5G56610.1 | chr5:22916738-22918137 FORWARD LENGTH=229
          Length = 228

 Score =  122 bits (306), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 66/69 (95%)

Query: 45  LFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFET 104
           LFYPTLLYN+VR K+Q++FRWWD++D+++L+GAVPFR+DVPRL+KLGV GVITLNEP+ET
Sbjct: 46  LFYPTLLYNLVRFKLQSQFRWWDQIDEYLLMGAVPFRKDVPRLKKLGVGGVITLNEPYET 105

Query: 105 LVPSSMYQA 113
           LVPSS+Y A
Sbjct: 106 LVPSSLYSA 114



>AT2G35680.1 | chr2:14997004-14998590 REVERSE LENGTH=338
          Length = 337

 Score =  118 bits (296), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 65/71 (91%)

Query: 45  LFYPTLLYNVVRSKVQAEFRWWDEVDQFILLGAVPFRRDVPRLQKLGVYGVITLNEPFET 104
           LFYPTL+YNVVR+K+++EFRWWD V +FILLGAVPF  DVP+L++LGV GVITLNEP+ET
Sbjct: 53  LFYPTLVYNVVRNKLESEFRWWDRVAEFILLGAVPFPSDVPQLKELGVCGVITLNEPYET 112

Query: 105 LVPSSMYQASC 115
           LVPSS+Y++ C
Sbjct: 113 LVPSSLYKSYC 123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,627,224
Number of extensions: 45568
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)