BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0150100 Os06g0150100|AK068890
(285 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G32960.1 | chr4:15908785-15910141 REVERSE LENGTH=265 277 4e-75
AT4G32970.1 | chr4:15910671-15914300 REVERSE LENGTH=639 222 2e-58
>AT4G32960.1 | chr4:15908785-15910141 REVERSE LENGTH=265
Length = 264
Score = 277 bits (709), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/270 (50%), Positives = 182/270 (67%), Gaps = 26/270 (9%)
Query: 9 GSPSPRFTLQPSRLPPEDMLFCVDVDLETRSEMRIXXXXXXXXXXXXXXXXXXXXXXXXX 68
G + R+ L+P R+ ED+L C+DVD E+ EM+
Sbjct: 10 GVGTTRYALKPGRIKSEDILICIDVDAESMVEMK-------------------------T 44
Query: 69 XXXXXXXVKRMDAVKQALLLFVHSKLTMCPDHRFAFASLGDTVSLVKKDFSSDAGSAVEA 128
+ RM+ VKQA++LF+H+KL++ PDHRFAFA+L + + +KK+F+SDA SAV +
Sbjct: 45 TGTNGRPLIRMECVKQAIILFIHNKLSINPDHRFAFATLAKSAAWLKKEFTSDAESAVAS 104
Query: 129 IQSLDASETRYAMADLTQLFKIAYQEGKRAELQGRLLRVVLIYCRSSTKPQHQWPIKQKN 188
++ L +++ + ADLT LF+ A QE K + Q R+ RV+LIYCRSS +P H+WP+ QK
Sbjct: 105 LRGLSGNKSS-SRADLTLLFRAAAQEAKVSRAQNRIFRVILIYCRSSMRPTHEWPLNQKL 163
Query: 189 FTLDIIYLHDKPTADNCPQKVYDALVDALEHVSQYEGYILETGQGLARILFRQTCILLSH 248
FTLD++YLHDKP+ DNCPQ VYD+LVDA+EHVS+YEGYI E+GQGLAR +F+ +LL+H
Sbjct: 164 FTLDVMYLHDKPSPDNCPQDVYDSLVDAVEHVSEYEGYIFESGQGLARSVFKPMSMLLTH 223
Query: 249 PLQRCIQDDLDIPKPLAKKNMVTEAAQNED 278
P QRC QDDLDIP LAKK VTEAA D
Sbjct: 224 PQQRCAQDDLDIPMSLAKKVPVTEAASAVD 253
>AT4G32970.1 | chr4:15910671-15914300 REVERSE LENGTH=639
Length = 638
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 161/263 (61%), Gaps = 32/263 (12%)
Query: 9 GSPSPRFTLQPSRLPPEDMLFCVDVDLETRSEMRIXXXXXXXXXXXXXXXXXXXXXXXXX 68
G+ + R +++PS ED+L CVDVD E+ EM+
Sbjct: 10 GAVATRDSVEPS----EDILICVDVDAESTVEMKTTGTNGKP------------------ 47
Query: 69 XXXXXXXVKRMDAVKQALLLFVHSKLTMCPDHRFAFASLGDTVSLVKKDFSSDAGSAVEA 128
+ R++ +K A+ F+H KL+ DHRFAFA+L + + +KK+FS+DA SA +
Sbjct: 48 -------LNRLECLKLAITRFIHDKLSRNSDHRFAFATLSQSAAWLKKEFSNDAKSAAAS 100
Query: 129 IQSLDASETRYAMADLTQLFKIAYQEGKRAELQGRLLRVVLIYCRSSTKPQHQWPIKQKN 188
++ + A+ + ADLT LF+ A QE K + Q R+LRV+L+YCRSS +P H WPI QK
Sbjct: 101 LREMSATRS-SGPADLTFLFQEAAQEAKTSRAQNRILRVILMYCRSSVRPTHDWPINQKL 159
Query: 189 FTLDIIYLHDKPTADNCPQKVYDALVDALEHVSQYEGYILETGQGLARILFRQTCILLSH 248
FTLD++YLHDK DNC VYD+LVDA+E VS+YEGYI E GL++ +FR+ LLSH
Sbjct: 160 FTLDVMYLHDKSGPDNCTHDVYDSLVDAIERVSEYEGYIFEGSHGLSQSVFRRMSTLLSH 219
Query: 249 PLQRCIQDDLDIPKPLAKKNMVT 271
P QRC Q +D+PKP AKK V+
Sbjct: 220 PPQRCAQ--VDLPKPPAKKPAVS 240
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,332,240
Number of extensions: 194056
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 188
Effective length of database: 8,447,217
Effective search space: 1588076796
Effective search space used: 1588076796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)