BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0148600 Os06g0148600|AK063946
         (393 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16290.1  | chr2:7058930-7060573 REVERSE LENGTH=416             53   3e-07

>AT2G16290.1 | chr2:7058930-7060573 REVERSE LENGTH=416
          Length = 415

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 30/178 (16%)

Query: 167 IVHRSISTDSFRFHDRPIKNNFYDIAFCGGKLYALSC---GKLFTVEMSEVHIEKPKVPH 223
           +++RS +    +  + P    + D+    GK YAL     G++F VE+S           
Sbjct: 207 VMYRSRNMSWTQVVEHPETYAYQDLVAFKGKFYALDSSGRGRVFVVELS----------- 255

Query: 224 VECIVEDFPTESHSQPCPENHICVTWPYLVASGGRLLNVIRLVGVPFPPEDDDDIFKDSL 283
               V + P+   SQ C +         LV  G  LL V R +  P     D+ I+    
Sbjct: 256 --LRVTEIPSVKGSQYCSKES-------LVQLGEELLLVQRFI--PAGRRYDEYIYT--- 301

Query: 284 TFSFEVYEADLNTGSRMWRRVESLGDQALFVGRHYSKSLSAAEYVGAQEDCIYFMCDD 341
              F+V+  D   G R W +V  L D+ +F+G       S  +  GA E+CI F+  +
Sbjct: 302 --WFKVFRLDEEGGKRKWVQVNYLNDRVIFLGARTKLCCSVHKLPGANENCIVFLASN 357



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.139    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,479,210
Number of extensions: 421092
Number of successful extensions: 971
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)