BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0143400 Os06g0143400|AK072729
(427 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08510.1 | chr1:2691546-2693409 REVERSE LENGTH=413 511 e-145
AT4G13050.1 | chr4:7617739-7619355 FORWARD LENGTH=368 255 3e-68
AT3G25110.1 | chr3:9146589-9148273 REVERSE LENGTH=363 251 8e-67
>AT1G08510.1 | chr1:2691546-2693409 REVERSE LENGTH=413
Length = 412
Score = 511 bits (1316), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/374 (66%), Positives = 297/374 (79%), Gaps = 19/374 (5%)
Query: 47 PSPGAMQVKAQAQALPKVNGTKVNLKTTSPDKEDII-------PYTAPKTFYNQLPDWSM 99
P+ G M+VK AQA PK+NG KV L P DI+ + AP+TF NQLPDWSM
Sbjct: 39 PNSGRMKVKPNAQAPPKINGKKVGL----PGSVDIVRTDTETSSHPAPRTFINQLPDWSM 94
Query: 100 LLAAVTTIFLAAEKQWTLLDWKPKKPDMLADTFGFGRIIQDGLVFRQNFLIRSYEIGADR 159
LLAA+TTIFLAAEKQW +LDWKP++ DML D FG GRI+QDGLVFRQNF IRSYEIGADR
Sbjct: 95 LLAAITTIFLAAEKQWMMLDWKPRRSDMLVDPFGIGRIVQDGLVFRQNFSIRSYEIGADR 154
Query: 160 TASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNLIWVVSKIQLLVERYPSWGDM 219
+ASIET+MNHLQETALNHVKTAGLLGDGFG+TPEM K+NLIWVV+++Q++V++YP+WGD+
Sbjct: 155 SASIETVMNHLQETALNHVKTAGLLGDGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDV 214
Query: 220 VQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRAEIGP 279
V+VDTWV+ +GKNGMRRDW VRD N+G+T+ RA+SVWVMMNK TRRLSK+P+EVR EI P
Sbjct: 215 VEVDTWVSQSGKNGMRRDWLVRDCNTGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEP 274
Query: 280 YFNGRSAISEEQGEKLPKPGTTFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILE 339
YF + E KL K D T + R GLTP+WSDLDVNQHVNNVKYIGWILE
Sbjct: 275 YFVNSDPVLAEDSRKLTK----IDD-KTADYVRSGLTPRWSDLDVNQHVNNVKYIGWILE 329
Query: 340 SAPISILEKHELASMTLDYRKECGRDSVLQSLTAVSGECDDGN--TESSIQCDHLLQLES 397
SAP+ I+E+ +L SMTL+YR+ECGRDSVLQSLTAV+G CD GN T ++C HLL+L+
Sbjct: 330 SAPVGIMERQKLKSMTLEYRRECGRDSVLQSLTAVTG-CDIGNLATAGDVECQHLLRLQD 388
Query: 398 GADIVKAHTEWRPK 411
GA++V+ TEW K
Sbjct: 389 GAEVVRGRTEWSSK 402
>AT4G13050.1 | chr4:7617739-7619355 FORWARD LENGTH=368
Length = 367
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 130/303 (42%), Positives = 192/303 (63%), Gaps = 20/303 (6%)
Query: 129 ADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGF 188
AD FGR+++DG +++ F++RSYE+G ++TA+IET+ N LQE A NHV+ G DGF
Sbjct: 68 ADRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGF 127
Query: 189 GATPEMSKRNLIWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQT 248
T M K +LIWV +++ + + +YP+W D+V+++TW + G+ G RRDW ++D +G+
Sbjct: 128 ATTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEV 187
Query: 249 ILRATSVWVMMNKNTRRLSKMPDEVRAEIGPYF--NGRSAISEEQGEKLPKPGTTFDGAA 306
I RATS WVMMN++TRRL ++ DEVR E + R A EE L K D A
Sbjct: 188 IGRATSKWVMMNQDTRRLQRVTDEVRDEYLVFCPPEPRLAFPEENNSSLKKIPKLEDPA- 246
Query: 307 TKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILESAPISILEKHELASMTLDYRKECGRDS 366
Q++ GL P+ +DLD+NQHVNNV YIGW+LES P I++ HEL +TLDYR+EC +D
Sbjct: 247 --QYSMLGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIIDTHELKVITLDYRRECQQDD 304
Query: 367 VLQSLTAVSGECD--------DGNTESSIQCD------HLLQL-ESGADIVKAHTEWRPK 411
++ SLT + +G+T SS + H+L+L E+G +I + T+WR K
Sbjct: 305 IVDSLTTSETPNEVVSKLTGTNGSTTSSKREHNESHFLHILRLSENGQEINRGRTQWRKK 364
Query: 412 RAQ 414
++
Sbjct: 365 SSR 367
>AT3G25110.1 | chr3:9146589-9148273 REVERSE LENGTH=363
Length = 362
Score = 251 bits (640), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 185/295 (62%), Gaps = 14/295 (4%)
Query: 128 LADTFGFGRIIQDGLVFRQNFLIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDG 187
LAD G + +DGL +++ F++RSYE+G+++TA++ET+ N LQE NH ++ G DG
Sbjct: 68 LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127
Query: 188 FGATPEMSKRNLIWVVSKIQLLVERYPSWGDMVQVDTWVAAAGKNGMRRDWHVRDYNSGQ 247
F T M K +LIWV +++ + + +YP+WGD+V+++TW + G+ G RRDW ++D +G+
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187
Query: 248 TILRATSVWVMMNKNTRRLSKMPDEVRAEIGPYF--NGRSAISEEQGEKLPKPGTTFDGA 305
RATS WVMMN++TRRL K+ D+VR E + R A EE L K D A
Sbjct: 188 VTGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPQEPRLAFPEENNRSLKKIPKLEDPA 247
Query: 306 ATKQFTRKGLTPKWSDLDVNQHVNNVKYIGWILESAPISILEKHELASMTLDYRKECGRD 365
Q++ GL P+ +DLD+NQHVNNV YIGW+LES P I++ HEL +TLDYR+EC +D
Sbjct: 248 ---QYSMIGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIVDTHELQVITLDYRRECQQD 304
Query: 366 SVLQSLTAVSGEC--DDGNTESSIQCD------HLLQLE-SGADIVKAHTEWRPK 411
V+ SLT + E +G+ S Q HLL+L G +I + T WR K
Sbjct: 305 DVVDSLTTTTSEIGGTNGSATSGTQGHNDSQFLHLLRLSGDGQEINRGTTLWRKK 359
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,267,087
Number of extensions: 388340
Number of successful extensions: 904
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 3
Length of query: 427
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 326
Effective length of database: 8,337,553
Effective search space: 2718042278
Effective search space used: 2718042278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)