BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0129600 Os06g0129600|J075115G22
(85 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45910.1 | chr5:18620420-18622264 REVERSE LENGTH=373 57 2e-09
AT1G28580.1 | chr1:10044603-10046379 REVERSE LENGTH=391 51 2e-07
AT1G28570.1 | chr1:10041838-10044112 REVERSE LENGTH=390 48 9e-07
AT1G28610.2 | chr1:10053877-10055665 REVERSE LENGTH=384 47 2e-06
>AT5G45910.1 | chr5:18620420-18622264 REVERSE LENGTH=373
Length = 372
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 21 DFRRGANMAIVGGTALDFDFFESIGVGFPFWNYGSMNVQLRWFRDLLPSICATAAPQSMY 80
DF+RGAN A+ G TA +F FF++ G+ ++++QL WF+ L PS+C T Y
Sbjct: 105 DFKRGANFAVAGATANEFSFFKNRGLSVTLLTNKTLDIQLDWFKKLKPSLCKTKPECEQY 164
>AT1G28580.1 | chr1:10044603-10046379 REVERSE LENGTH=391
Length = 390
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 20 GDFRRGANMAIVGGTALDFDFFESIGVGFPFWNYGSMNVQLRWFRDLLPSICATAA 75
+F +G N A+ G TAL+ F E G+ FP+ N S+ VQL F++ LPSIC + +
Sbjct: 108 ANFEKGVNFAVGGATALERSFLEDRGIHFPYTNV-SLGVQLNSFKESLPSICGSPS 162
>AT1G28570.1 | chr1:10041838-10044112 REVERSE LENGTH=390
Length = 389
Score = 48.1 bits (113), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 20 GDFRRGANMAIVGGTALDFDFFESIGVGFPFWNYGSMNVQLRWFRDLLPSICATAA 75
+F +G N A+ G TAL+ F E G+ FP+ N S+ VQL F++ LP++C + +
Sbjct: 105 ANFEKGVNFAVGGATALERSFLEERGIHFPYTNV-SLAVQLSSFKESLPNLCVSPS 159
>AT1G28610.2 | chr1:10053877-10055665 REVERSE LENGTH=384
Length = 383
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 20 GDFRRGANMAIVGGTALDFDFFESIGVGFPFWNYGSMNVQLRWFRDLLPSICAT 73
G+F +G N A+ G TAL+ E G+ +P N S+ +QL+ F++ LP++C +
Sbjct: 102 GNFEKGVNFAVAGATALETSILEKRGIYYPHSNI-SLGIQLKTFKESLPNLCGS 154
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.141 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,675,156
Number of extensions: 58446
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 5
Length of query: 85
Length of database: 11,106,569
Length adjustment: 56
Effective length of query: 29
Effective length of database: 9,571,273
Effective search space: 277566917
Effective search space used: 277566917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)