BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0126500 Os06g0126500|AK065197
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304 202 2e-52
AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343 202 2e-52
AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297 167 8e-42
AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270 133 2e-31
AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166 83 2e-16
AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164 83 2e-16
>AT5G07220.1 | chr5:2265545-2266720 REVERSE LENGTH=304
Length = 303
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 134/206 (65%), Gaps = 6/206 (2%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAA 108
WE RPGGM+VQ+R + P RV+VK+ + HEI INSQ+SFGELKKM++
Sbjct: 22 WESRPGGMVVQRRTDQNSDVP------RVFRVRVKYGSVYHEININSQSSFGELKKMLSD 75
Query: 109 RTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXXXNGHLXXX 168
+ GLH +D KV+YKDKERDSK FLD+ GVKDRSKLVV EDP N +
Sbjct: 76 QVGLHHEDMKVLYKDKERDSKMFLDLCGVKDRSKLVVKEDPISQEKRLLAKRKNAAIEKA 135
Query: 169 XXXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGDVK 228
D+LA +V+A + + KG KV E +V + E+LMN+LL+LDA++ADGDVK
Sbjct: 136 SKSISDISFEVDRLAGQVSAFETVINKGGKVEEKSLVNLIEMLMNQLLRLDAIIADGDVK 195
Query: 229 AQRRLQVKRVQKYVETLDAVMAKNAA 254
R++QV+RVQKYVE LD + KN+A
Sbjct: 196 LMRKMQVQRVQKYVEALDLLKVKNSA 221
>AT5G52060.1 | chr5:21152449-21153741 REVERSE LENGTH=343
Length = 342
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 137/204 (67%), Gaps = 2/204 (0%)
Query: 50 EVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAAR 109
E+RPGGMLVQKR D P+ IRV++K+ + HEI I+ QASFGELKKM+
Sbjct: 41 EIRPGGMLVQKRNPDLDPVGPPPPPM--IRVRIKYGAVYHEINISPQASFGELKKMLTGP 98
Query: 110 TGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXXXNGHLXXXX 169
TG+H DQK+MYKDKERDSKAFLD++GVKD+SK+V++EDP
Sbjct: 99 TGIHHQDQKLMYKDKERDSKAFLDVSGVKDKSKMVLIEDPLSQEKRFLEMRKIAKTEKAS 158
Query: 170 XXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGDVKA 229
D+L +V+A + +KG K+AE D+V V ELLMNEL+KLDA+VA+GDVK
Sbjct: 159 KAISDISLEVDRLGGRVSAFEMVTKKGGKIAEKDLVTVIELLMNELIKLDAIVAEGDVKL 218
Query: 230 QRRLQVKRVQKYVETLDAVMAKNA 253
QR++QVKRVQ YVETLDA+ KN+
Sbjct: 219 QRKMQVKRVQNYVETLDALKVKNS 242
>AT5G62100.1 | chr5:24940477-24941775 FORWARD LENGTH=297
Length = 296
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 130/215 (60%), Gaps = 17/215 (7%)
Query: 50 EVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAAR 109
E+RPGGM+VQKR + P IRV+VK+ + HEI INSQ++FGELKK+++
Sbjct: 17 ELRPGGMVVQKRTDHSSSVPRG------IRVRVKYGSVHHEISINSQSTFGELKKILSGA 70
Query: 110 TGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXXXXXXNGHLXXXX 169
TG+H D +++YKDKERDSK FLD++GVKDRSKL+++EDP
Sbjct: 71 TGVHHQDMQIIYKDKERDSKMFLDLSGVKDRSKLILIEDPISQEKRLLELRKIATKEKSS 130
Query: 170 XXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADGDVKA 229
++LA +++A D + KG KV E ++ + E+LMN+L+KLDA+ DGDVK
Sbjct: 131 KAISDISFQVERLAGQLSAFDTVIGKGGKVEEKNLENLMEMLMNQLVKLDAISGDGDVKL 190
Query: 230 QRRLQ-----------VKRVQKYVETLDAVMAKNA 253
++++Q +R+ KYVE LD + KN+
Sbjct: 191 KKKMQNLMIRFTNCWKEERLHKYVEALDLLKIKNS 225
>AT3G51780.1 | chr3:19207029-19208178 REVERSE LENGTH=270
Length = 269
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 114/214 (53%), Gaps = 8/214 (3%)
Query: 46 EEVWEVRPGGMLVQKRGGGA--------DEEPVNVKPVPTIRVKVKHAGITHEIYINSQA 97
E WEVRPGGMLVQ+R A D + + TIR+ V H H+++I++ A
Sbjct: 8 ESEWEVRPGGMLVQRRDDAASSDHKPLQDPDSASAAFAQTIRITVSHGSSHHDLHISAHA 67
Query: 98 SFGELKKMVAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPXXXXXXXX 157
+FG++KK + +TGL + K++++ ERD L AGVKD SKLVVV +
Sbjct: 68 TFGDVKKALVQKTGLEASELKILFRGVERDDAEQLQAAGVKDASKLVVVVEDTNKRVEQQ 127
Query: 158 XXXXNGHLXXXXXXXXXXXXXXDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLK 217
+ DKL+ +V AL+ +V G +VA + ELLM +LLK
Sbjct: 128 PPVVTKEMEKAIAAVNAVTGEVDKLSDRVVALEVAVNGGTQVAVREFDMAAELLMRQLLK 187
Query: 218 LDAVVADGDVKAQRRLQVKRVQKYVETLDAVMAK 251
LD + A+GD K QR+ +V+R+Q E +D + A+
Sbjct: 188 LDGIEAEGDAKVQRKAEVRRIQNLQEAVDKLKAR 221
>AT5G40630.1 | chr5:16271402-16272429 REVERSE LENGTH=166
Length = 165
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 68/101 (67%), Gaps = 6/101 (5%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAA 108
WE+RPGGMLVQKR E N + + ++RV + +++EI I++ ++FGELK M+A
Sbjct: 57 WEMRPGGMLVQKR-----SEDSNTEDLISLRVSTV-SQLSYEISIDANSTFGELKMMIAI 110
Query: 109 RTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDP 149
+G+ +Q+++++ KER+ + +L M GV D K+ +++DP
Sbjct: 111 VSGIEAKEQRLLFRGKEREDREYLHMIGVGDGDKVFLLQDP 151
>AT5G14360.1 | chr5:4631038-4631641 FORWARD LENGTH=164
Length = 163
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 8/101 (7%)
Query: 49 WEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKMVAA 108
WE+RPGGMLVQKR E+ I ++V H++ I + ++FGELK +++
Sbjct: 49 WELRPGGMLVQKRQESIGED--------LISIRVSTFAHFHDLSIEATSTFGELKMVLSL 100
Query: 109 RTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDP 149
TGL P Q++++K KER+ +L M GV D+ K++++EDP
Sbjct: 101 LTGLEPKQQRLVFKGKEREDHEYLHMVGVGDKDKVLLLEDP 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,504,723
Number of extensions: 140907
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)