BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0115100 Os06g0115100|AK059160
         (77 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01170.1  | chr1:74105-74443 REVERSE LENGTH=84                 117   8e-28
AT4G00860.1  | chr4:359548-359868 REVERSE LENGTH=81               108   6e-25

>AT1G01170.1 | chr1:74105-74443 REVERSE LENGTH=84
          Length = 83

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 62/74 (83%)

Query: 3  AGYIAGSLVGSFAIAYLCDTFVSDKKAFGGSIPKTVSDKEWWQATDTKFQAWPRTAGPPV 62
          A YI G+L+GSF I+Y+ D  +SD K FGG+ P TVS+KEWW ATD KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 IMNPISRQNFIVKS 76
          +MNPISRQNFIVK+
Sbjct: 67 VMNPISRQNFIVKT 80



>AT4G00860.1 | chr4:359548-359868 REVERSE LENGTH=81
          Length = 80

 Score =  108 bits (270), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 58/74 (78%)

Query: 3  AGYIAGSLVGSFAIAYLCDTFVSDKKAFGGSIPKTVSDKEWWQATDTKFQAWPRTAGPPV 62
          A YI G+L GS  +AY+CD  +SD K FGG+ P T+++KEW  AT+ + QAWPR AGPPV
Sbjct: 4  ATYIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPV 63

Query: 63 IMNPISRQNFIVKS 76
          +MNPISRQNFIVKS
Sbjct: 64 VMNPISRQNFIVKS 77



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,738,995
Number of extensions: 63006
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)