BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0114500 Os06g0114500|AK066771
         (79 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01170.1  | chr1:74105-74443 REVERSE LENGTH=84                 122   3e-29
AT4G00860.1  | chr4:359548-359868 REVERSE LENGTH=81               107   9e-25

>AT1G01170.1 | chr1:74105-74443 REVERSE LENGTH=84
          Length = 83

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/72 (77%), Positives = 62/72 (86%)

Query: 4  KYIAAGLVGSFAISYVCDHFIAEKKIFGGTTPHTVSDKEWWQATDKKFQAWPRTAGPPVV 63
          KYI   L+GSF ISY+ D  I++ KIFGGTTP TVS+KEWW ATD+KFQAWPRTAGPPVV
Sbjct: 8  KYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVV 67

Query: 64 MNPISRQNFIVK 75
          MNPISRQNFIVK
Sbjct: 68 MNPISRQNFIVK 79



>AT4G00860.1 | chr4:359548-359868 REVERSE LENGTH=81
          Length = 80

 Score =  107 bits (268), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 57/71 (80%)

Query: 5  YIAAGLVGSFAISYVCDHFIAEKKIFGGTTPHTVSDKEWWQATDKKFQAWPRTAGPPVVM 64
          YI   L GS  ++YVCD  I++ K+FGGTTP T+++KEW  AT+++ QAWPR AGPPVVM
Sbjct: 6  YIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVM 65

Query: 65 NPISRQNFIVK 75
          NPISRQNFIVK
Sbjct: 66 NPISRQNFIVK 76



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,869,693
Number of extensions: 69041
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)