BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0109500 Os06g0109500|Os06g0109500
         (303 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38740.1  | chr2:16194639-16195995 REVERSE LENGTH=245          204   6e-53
AT1G56500.1  | chr1:21159775-21167092 FORWARD LENGTH=1056          56   3e-08

>AT2G38740.1 | chr2:16194639-16195995 REVERSE LENGTH=245
          Length = 244

 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 2/224 (0%)

Query: 60  RMSVAEVSLVEAVLFDIDGTMCVSDPFHHRAFSELLQALGYNSGVPITPEFGMAHMAGRS 119
           + S+++++ +EA+LFD+DGT+C SDP H  AF ELLQ +G+N+GVPI  +F + ++AG+ 
Sbjct: 13  KPSLSQLAPLEAILFDVDGTLCDSDPIHLIAFQELLQEIGFNNGVPIDEKFFVENIAGKH 72

Query: 120 NHQIGSFLFPDWPQHRLDAFFADKEALFARYAAEGLREVAGLTDLCRWAAARGLKRAAVT 179
           N +I   LFPD     L  F  +KEAL+ +  AE ++ + GL  L +W   RGLKRAAVT
Sbjct: 73  NSEIALLLFPDDVSRGL-KFCDEKEALYRKIVAEKIKPLDGLIKLTKWIEDRGLKRAAVT 131

Query: 180 NAPRANADLMISILGLSDFFQVIVAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFEDS 239
           NAP+ NA+LMIS LGL+DFFQ ++  + +C+ PKP P PYL+AL +L  S  HTLVFEDS
Sbjct: 132 NAPKENAELMISKLGLTDFFQAVILGS-ECEFPKPHPGPYLKALEVLNVSKEHTLVFEDS 190

Query: 240 XXXXXXXXXXXMPVIXXXXXXXXXXXXXXXXSLVIRDYKDHKLW 283
                      MPVI                + +I +Y D KLW
Sbjct: 191 ISGIKAGVAAGMPVIGLTTGNPASLLMQAKPAFLIENYADPKLW 234



>AT1G56500.1 | chr1:21159775-21167092 FORWARD LENGTH=1056
          Length = 1055

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 69  VEAVLFDIDGTMCVSDPFHHRA----FSELLQALGYNSGVPITPEFGMAHMAGRSNHQIG 124
           V AVLFD+DG +C S+    RA    F+E+   +  +  VP         + G ++ +  
Sbjct: 74  VSAVLFDMDGVLCNSEDLSRRAAVDVFTEMGVEVTVDDFVPFMGTGEAKFLGGVASVKEV 133

Query: 125 SFLFPDWPQHRLDAFFADKEALFARYAAEGLREVAGLTDLCRWAAARGLKRAAVTNAPRA 184
               PD  + R    + DK A       E      G  +L      +GLK A  ++A R 
Sbjct: 134 KGFDPDAAKERFFEIYLDKYA-----KPESGIGFPGALELVTECKNKGLKVAVASSADRI 188

Query: 185 NADLMISILGLS-DFFQVIVAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFEDS 239
             D  +   GLS   F  IV+A D  +  KP+P+ +L A  +LG      +V ED+
Sbjct: 189 KVDANLKAAGLSLTMFDAIVSA-DAFENLKPAPDIFLAAAKILGVPTSECVVIEDA 243



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,603,304
Number of extensions: 160591
Number of successful extensions: 441
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)