BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0108500 Os06g0108500|Os06g0108500
(121 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G51860.1 | chr5:21081844-21084126 REVERSE LENGTH=212 54 2e-08
AT5G51870.3 | chr5:21085635-21087923 REVERSE LENGTH=220 45 6e-06
AT2G45660.1 | chr2:18807799-18810193 REVERSE LENGTH=215 45 6e-06
>AT5G51860.1 | chr5:21081844-21084126 REVERSE LENGTH=212
Length = 211
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 2 EIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQKK 61
+I+ +E + RKM G++L+SCS++EL + Q+EKSL +RL+KA +Y +Q K
Sbjct: 101 KIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAK------LYEDELQ-K 153
Query: 62 LMDKISQLQQQEKILSEENALLLDQGKVQHAPIGAPAREMNQNQHVQDIDVDTELVIG 119
L K +L+ + LS + + +V P+G P+ + DV+T+L IG
Sbjct: 154 LKAKERELKDERVRLSLKKTIYTHLCQVGERPMGMPSGSKEKE------DVETDLFIG 205
>AT5G51870.3 | chr5:21085635-21087923 REVERSE LENGTH=220
Length = 219
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 15/88 (17%)
Query: 2 EIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQKK 61
+ID +E + RK+ G+ L+SCS+ EL ++ Q+EKSL +R +KA ++
Sbjct: 101 KIDLLEVHHRKLLGQGLDSCSVTELQEIDTQIEKSLRIVRSRKAELYA------------ 148
Query: 62 LMDKISQLQQQEK-ILSEENALLLDQGK 88
D++ +L+++E+ +L+E LL +Q +
Sbjct: 149 --DQLKKLKEKERELLNERKRLLEEQNR 174
>AT2G45660.1 | chr2:18807799-18810193 REVERSE LENGTH=215
Length = 214
Score = 45.4 bits (106), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 14/82 (17%)
Query: 2 EIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQKK 61
+I+ +EA RK+ GE + +CS++EL +E Q+EKS+ IR +K +
Sbjct: 100 KIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKT--------------QV 145
Query: 62 LMDKISQLQQQEKILSEENALL 83
++I QL+Q+EK L+ EN L
Sbjct: 146 FKEQIEQLKQKEKALAAENEKL 167
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.127 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,278,590
Number of extensions: 76217
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 9
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 105 (45.1 bits)