BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0106000 Os06g0106000|AK059897
         (306 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24020.1  | chr5:8116731-8117711 FORWARD LENGTH=327            311   2e-85

>AT5G24020.1 | chr5:8116731-8117711 FORWARD LENGTH=327
          Length = 326

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 157/264 (59%), Positives = 181/264 (68%), Gaps = 1/264 (0%)

Query: 29  PELSGPTPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDXXXXXXXXXXXXXXXX 88
           PEL+G TPR                                 +D                
Sbjct: 51  PELAGETPRIVVITSGKGGVGKTTTTANVGLSLARYGFSVVAIDADLGLRNLDLLLGLEN 110

Query: 89  XVHLTAADVLAGDCRLDQALVRHRALHDLQLLCLSKPRSKLPLAFGSKTLTWVADALR-R 147
            V+ T  +V+ GDCRLDQALVR +   + +LLC+SKPRSKLP+ FG K L W+ DAL+ R
Sbjct: 111 RVNYTCVEVINGDCRLDQALVRDKRWSNFELLCISKPRSKLPMGFGGKALEWLVDALKTR 170

Query: 148 AANPPAFILIDCPAGVDAGFVTAIAPAEEAVLVTTPDITALRDADRVAGLLECDGIKDIK 207
               P FI+IDCPAG+DAGF+TAI PA EAVLVTTPDITALRDADRV GLLECDGI+DIK
Sbjct: 171 PEGSPDFIIIDCPAGIDAGFITAITPANEAVLVTTPDITALRDADRVTGLLECDGIRDIK 230

Query: 208 IIVNRVRPDLVKGEDMMSALDVQEMLGLPLLGVVPEDAEVIRSTNRGVPLVLNDPPTPAG 267
           +IVNRVR D++KGEDMMS LDVQEMLGL LLGV+PED+EVIRSTNRG PLVLN PPT AG
Sbjct: 231 MIVNRVRTDMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTNRGFPLVLNKPPTLAG 290

Query: 268 LALEQATWRLVERDAMTAVMVEEQ 291
           LA EQA WRLVE+D+M AVMVEE+
Sbjct: 291 LAFEQAAWRLVEQDSMKAVMVEEE 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,806,277
Number of extensions: 174555
Number of successful extensions: 385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 208
Effective length of database: 8,419,801
Effective search space: 1751318608
Effective search space used: 1751318608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)