BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0595500 Os05g0595500|Os05g0595500
         (250 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23895.1  | chr4:12422883-12424146 FORWARD LENGTH=248          244   3e-65

>AT4G23895.1 | chr4:12422883-12424146 FORWARD LENGTH=248
          Length = 247

 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/232 (53%), Positives = 167/232 (71%), Gaps = 4/232 (1%)

Query: 1   MDD-VYGRIEVFPQHF-LPSQQSMETPADGLSTSKTNLDXXXXXXXXXWTPKRVMGAASL 58
           MDD    ++ + P HF  PS  +  +  D  S+S+   D          T + +  AA++
Sbjct: 1   MDDGTPKKLNILPDHFSAPSPTAESSQHDTPSSSQPKDDSSLRPYSQSRTRRNLKRAATM 60

Query: 59  LHLLSLPRIRWSSSTEDDDKIELTRAEVESLRTEIADAEERESQLKARLENIDEVLRYAR 118
           L+L +L R+ W S  ++  K+EL+ AE+ESLR+E++D EERE+ LKA+LE++DEVLR AR
Sbjct: 61  LNLFTLRRLPWVSDGQE--KVELSAAELESLRSELSDMEEREAYLKAQLEHVDEVLRSAR 118

Query: 119 LSGYLYIRSRWTQLPGEPPILDDADVDDWLPRFVVLQGQCVYYYLKSTDLSPQESTLLCD 178
           LSGYL+IRSRW  LPGEPP +DD +VDDWLPRFVVLQG C+++YL STDLSPQ+STLL D
Sbjct: 119 LSGYLFIRSRWAALPGEPPPIDDTEVDDWLPRFVVLQGPCLFFYLLSTDLSPQDSTLLAD 178

Query: 179 IVEVGQLPNFVPEDEKTRYAFYIMTSQGLKFECSSMSEIQVDSWVRAIRGDC 230
           IVE+G +P++  E ++T Y FYI+T QGL+FECSS S+ QVDSW+  +R DC
Sbjct: 179 IVEIGSVPSYTREFDETHYCFYILTRQGLRFECSSTSKTQVDSWLSVLRLDC 230



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,289,782
Number of extensions: 201762
Number of successful extensions: 747
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)