BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0593200 Os05g0593200|AK059115
         (158 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55160.3  | chr1:20578476-20579803 FORWARD LENGTH=214           69   8e-13
AT2G19530.1  | chr2:8460219-8461486 FORWARD LENGTH=203             69   9e-13

>AT1G55160.3 | chr1:20578476-20579803 FORWARD LENGTH=214
          Length = 213

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 45  RRMFPFL-LAANVFVGAYMLMRTYQKDSGKKDTENDXXXXXXXXXXXXXEKP------AE 97
           R +F F+ +   V   +Y+  RT +KD      E               EK       AE
Sbjct: 96  RIVFSFIFMMLRVIYDSYLFFRTKKKDLDPV-VEETAAKSSSVAAPVTVEKTLSSTVVAE 154

Query: 98  PIVAPIKVLTPISQDDQRQLYKWMLEEKRKIKPRDAAEKKKINGEKALLKEFIRAGSLPS 157
           P+V  IK   PI +  QR+L+KWMLEEKRK+ P++A EKK+ + EKA+LK+FI + ++P+
Sbjct: 155 PVV--IKAREPIPEKQQRELFKWMLEEKRKVNPKNAEEKKRNDEEKAILKQFIGSKTIPT 212

Query: 158 L 158
            
Sbjct: 213 F 213



>AT2G19530.1 | chr2:8460219-8461486 FORWARD LENGTH=203
          Length = 202

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 44/51 (86%)

Query: 108 PISQDDQRQLYKWMLEEKRKIKPRDAAEKKKINGEKALLKEFIRAGSLPSL 158
           PI +D+Q++L+KW+LEEKRKI+P+D  EKK+I+ EKA+LK+FIRA  +P L
Sbjct: 133 PIPEDEQKELFKWILEEKRKIEPKDRKEKKQIDEEKAILKQFIRAERIPKL 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,239,368
Number of extensions: 76762
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 68
Effective length of database: 8,639,129
Effective search space: 587460772
Effective search space used: 587460772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)