BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0579900 Os05g0579900|AK063417
(708 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36520.1 | chr4:17230589-17235435 REVERSE LENGTH=1423 264 1e-70
AT1G75310.1 | chr1:28261004-28266124 FORWARD LENGTH=1449 224 1e-58
AT4G12780.1 | chr4:7512200-7516655 FORWARD LENGTH=905 210 3e-54
AT4G12770.1 | chr4:7506736-7511408 REVERSE LENGTH=892 209 4e-54
AT1G21660.1 | chr1:7605924-7608835 FORWARD LENGTH=524 182 6e-46
AT1G75100.1 | chr1:28191108-28193769 REVERSE LENGTH=652 134 2e-31
AT1G30280.1 | chr1:10662851-10664570 REVERSE LENGTH=456 99 9e-21
>AT4G36520.1 | chr4:17230589-17235435 REVERSE LENGTH=1423
Length = 1422
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 124/167 (74%), Positives = 143/167 (85%), Gaps = 2/167 (1%)
Query: 542 DTQFQRAVSSNLMRNPDSYSKGLEVESALRHKARLERHQRTAERVTKALAEKNMRDLLAQ 601
D QFQ +VS R DS+ G E ES R+ +RLERHQRTA+RV KALAEKNMRDL+AQ
Sbjct: 1258 DKQFQNSVSFGASRYQDSH--GTEGESPQRYTSRLERHQRTADRVAKALAEKNMRDLVAQ 1315
Query: 602 REQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELITAAAVK 661
REQAE+ R++E LD E+KRWS+GKEGN+RALLSTLQYILG +SGWQP+PLTE+IT+AAVK
Sbjct: 1316 REQAERIRIAETLDTEVKRWSSGKEGNIRALLSTLQYILGPESGWQPLPLTEVITSAAVK 1375
Query: 662 KAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKDAWNKFTSEER 708
+AYRKATLCVHPDKLQQRGA I QKYICEKVFDLLK+AWN+F SE R
Sbjct: 1376 RAYRKATLCVHPDKLQQRGANIHQKYICEKVFDLLKEAWNRFNSEGR 1422
>AT1G75310.1 | chr1:28261004-28266124 FORWARD LENGTH=1449
Length = 1448
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 98/138 (71%), Positives = 124/138 (89%)
Query: 571 RHKARLERHQRTAERVTKALAEKNMRDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLR 630
R KAR ERHQRT++R +ALAEK +RDL Q+EQ E++RL+E LD ++KRWS+GKE NLR
Sbjct: 1311 RCKARSERHQRTSDRAAEALAEKKLRDLKTQKEQTERNRLAEALDADVKRWSSGKENNLR 1370
Query: 631 ALLSTLQYILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICE 690
AL+STLQYILGA+SGW+P+PLT+L+++A+V+KAYRKATL VHPDKLQQRGA+ +QKYICE
Sbjct: 1371 ALISTLQYILGAESGWKPIPLTDLVSSASVRKAYRKATLYVHPDKLQQRGASTQQKYICE 1430
Query: 691 KVFDLLKDAWNKFTSEER 708
KVFDLLK+AWNKF ++ER
Sbjct: 1431 KVFDLLKEAWNKFGADER 1448
>AT4G12780.1 | chr4:7512200-7516655 FORWARD LENGTH=905
Length = 904
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 107/129 (82%)
Query: 579 HQRTAERVTKALAEKNMRDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQY 638
HQRT ER KALAEKN RDL QREQ EK R+ LD EIKRW GKEGNLRALLSTLQY
Sbjct: 774 HQRTQERAAKALAEKNERDLQVQREQVEKDRIGVTLDVEIKRWGAGKEGNLRALLSTLQY 833
Query: 639 ILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKD 698
+L + GWQPV LT+LITAA+VKK YRKATLC+HPDK+QQ+GA ++QKYI EKVFD+LK+
Sbjct: 834 VLWPECGWQPVSLTDLITAASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKE 893
Query: 699 AWNKFTSEE 707
AWNKF SEE
Sbjct: 894 AWNKFNSEE 902
>AT4G12770.1 | chr4:7506736-7511408 REVERSE LENGTH=892
Length = 891
Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 107/129 (82%)
Query: 579 HQRTAERVTKALAEKNMRDLLAQREQAEKHRLSEYLDPEIKRWSNGKEGNLRALLSTLQY 638
HQRT ER KALAEKN RDL QREQAEK R+ LD EI+RW GKEGNLRALLSTLQY
Sbjct: 761 HQRTQERAAKALAEKNERDLQVQREQAEKDRIGGTLDVEIRRWGAGKEGNLRALLSTLQY 820
Query: 639 ILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRGATIRQKYICEKVFDLLKD 698
+L + GWQPV LT+LIT A+VKK YRKATLC+HPDK+QQ+GA ++QKYI EKVFD+LK+
Sbjct: 821 VLWPECGWQPVSLTDLITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKE 880
Query: 699 AWNKFTSEE 707
AWNKF SEE
Sbjct: 881 AWNKFNSEE 889
>AT1G21660.1 | chr1:7605924-7608835 FORWARD LENGTH=524
Length = 523
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/141 (59%), Positives = 109/141 (77%)
Query: 567 ESALRHKARLERHQRTAERVTKALAEKNMRDLLAQREQAEKHRLSEYLDPEIKRWSNGKE 626
ES R KAR +R QRT RV +A+A+ N RD ++ EQ ++ R+SE +D EI+RW+ GKE
Sbjct: 381 ESEERRKARWDREQRTKSRVAQAVADMNNRDHQSRIEQEQRTRISETVDTEIRRWATGKE 440
Query: 627 GNLRALLSTLQYILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQQRGATIRQK 686
GN+RALLS+L +L GW+ V +T+LIT++AVKK YRKATL VHPDK+QQ+GAT+ QK
Sbjct: 441 GNMRALLSSLHIVLWPGCGWEAVSITDLITSSAVKKVYRKATLYVHPDKVQQKGATLEQK 500
Query: 687 YICEKVFDLLKDAWNKFTSEE 707
YI EKVFD+LK+AWNKF EE
Sbjct: 501 YIAEKVFDILKEAWNKFNKEE 521
>AT1G75100.1 | chr1:28191108-28193769 REVERSE LENGTH=652
Length = 651
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 77/92 (83%)
Query: 614 LDPEIKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELITAAAVKKAYRKATLCVHP 673
+D +I++WS+GK GN+R+LLSTLQYIL + SGW+PVPL ++I AV+K+Y++A L +HP
Sbjct: 556 IDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHP 615
Query: 674 DKLQQRGATIRQKYICEKVFDLLKDAWNKFTS 705
DKLQQ+GA+ QKY+ EKVF+LL++AW+ F +
Sbjct: 616 DKLQQKGASANQKYMAEKVFELLQEAWDHFNT 647
>AT1G30280.1 | chr1:10662851-10664570 REVERSE LENGTH=456
Length = 455
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 618 IKRWSNGKEGNLRALLSTLQYILGADSGWQPVPLTELITAAAVKKAYRKATLCVHPDKLQ 677
I+ W GKE N+R LLSTL ++L ++S W +PL L + VKKAY++A LC+HPDKLQ
Sbjct: 361 IRIWLTGKETNIRLLLSTLHHVLWSNSNWDSIPLANLRDGSQVKKAYQRARLCLHPDKLQ 420
Query: 678 QRGATIR-QKYICEKVFDLLKDAWNKFTSEE 707
QRG T QK + +VF +L++AW + + E
Sbjct: 421 QRGGTSPIQKSVASRVFAILQEAWAVYVTNE 451
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.306 0.123 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,224,272
Number of extensions: 519679
Number of successful extensions: 1738
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1739
Number of HSP's successfully gapped: 10
Length of query: 708
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 602
Effective length of database: 8,200,473
Effective search space: 4936684746
Effective search space used: 4936684746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 115 (48.9 bits)