BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0576700 Os05g0576700|AK108377
(173 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18570.1 | chr3:6396072-6396572 REVERSE LENGTH=167 97 3e-21
AT1G48990.1 | chr1:18121470-18121979 FORWARD LENGTH=170 80 8e-16
AT2G25890.1 | chr2:11037435-11037884 FORWARD LENGTH=150 63 6e-11
AT4G25140.1 | chr4:12900498-12901259 FORWARD LENGTH=174 50 5e-07
>AT3G18570.1 | chr3:6396072-6396572 REVERSE LENGTH=167
Length = 166
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 120 TWMYRYFTGRHPVGADRVDYARSRIADTASHVKDYAREYGGYLHSRAKDAAPGA 173
+W YRYF G HPVG++++DYARSRI DTASHVKDYAREYGGY H RAKDAAPGA
Sbjct: 113 SWTYRYFRGMHPVGSNQMDYARSRIYDTASHVKDYAREYGGYFHGRAKDAAPGA 166
>AT1G48990.1 | chr1:18121470-18121979 FORWARD LENGTH=170
Length = 169
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 120 TWMYRYFTGRHPVGADRVDYARSRIADTASHVKDYAREYGGYLHSRAKDAAPGA 173
+W+YRYF G HP+ +D+VDYARSRI DTA+HVKDYA GGY H KDAAPGA
Sbjct: 119 SWLYRYFKGMHPLRSDQVDYARSRIHDTAAHVKDYA---GGYFHGTLKDAAPGA 169
>AT2G25890.1 | chr2:11037435-11037884 FORWARD LENGTH=150
Length = 149
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 35 LLRRVQTHAPNSTQVVGFXXXXXXXXXXXXXXXXXXXXXXXXXIFLGPIALLTSPIWVPX 94
++R + +P++ Q+V F I P+ +L SP+ VP
Sbjct: 14 IMRSLHESSPSTRQIVRFVTAATIGLSLLVLSGLTLTGTVIGLIVATPLMVLFSPVLVPA 73
Query: 95 XXXXXXXXXXXXXXXXXXXXXXXXGTWMYRYFTGRHPVGADRVDYARSRIADTASHVKDY 154
TW+Y+Y TG+HP+GAD+VDYAR RIA+
Sbjct: 74 VITIGLLTMGFLFSGGCGVAAATALTWIYKYVTGKHPMGADKVDYARMRIAEK------- 126
Query: 155 AREYGGYLHSR 165
A+E G Y HS+
Sbjct: 127 AKELGHYTHSQ 137
>AT4G25140.1 | chr4:12900498-12901259 FORWARD LENGTH=174
Length = 173
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%)
Query: 82 PIALLTSPIWVPXXXXXXXXXXXXXXXXXXXXXXXXXGTWMYRYFTGRHPVGADRVDYAR 141
P+ ++ SPI VP +W+Y+Y TG HP G+D++D AR
Sbjct: 76 PLLVIFSPILVPALITVALLITGFLSSGGFGIAAITVFSWIYKYATGEHPQGSDKLDSAR 135
Query: 142 SRIADTASHVKDYAREYG 159
++ A +KD A+ YG
Sbjct: 136 MKLGSKAQDLKDRAQYYG 153
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,251,404
Number of extensions: 52024
Number of successful extensions: 101
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 4
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)