BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0569900 Os05g0569900|AK069714
(288 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17450.2 | chr1:5988579-5996693 REVERSE LENGTH=1845 162 2e-40
AT1G59453.1 | chr1:21846902-21853384 REVERSE LENGTH=1730 147 4e-36
>AT1G17450.2 | chr1:5988579-5996693 REVERSE LENGTH=1845
Length = 1844
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 148/265 (55%), Gaps = 18/265 (6%)
Query: 1 MDALVSAALEEVSARLSAGIPVTDXXXXXXXXXXXXXXPIGPAVKRAVWARLIVLPVISV 60
MD++V ALEE+ + + GIP+ P+ P+VK VW L+ +P +
Sbjct: 1 MDSIVCTALEEICCQGNTGIPLV------SLWSRLSPPPLSPSVKAHVWRNLLAVPQLQF 54
Query: 61 VLGXXXXXXXGPVVDDPKVGVEDAERLGMRLVASAALRDNFLGMYDLRHSKSEMSAVQKK 120
+ +E+A RL +R+ A+ LR NF+G+YD + + + +SA+Q++
Sbjct: 55 KAKNTVYEPSDASIQQ----LEEALRLDLRIFANEKLRGNFVGLYDAQSNNTTISAIQRR 110
Query: 121 ALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRSTIIKFKGNGAEKED 180
L+R+ +R +GV QN L K FG+EG NF YIV+ L+S+ L+V++ I++ K + E
Sbjct: 111 VLERLAVARANGVAQNLLAKEFGIEGRNFFYIVKHLESRGLVVKQPAIVRTK--EVDGEG 168
Query: 181 ASQNKRVTNTNSLYLTRYAKDCMNSHQRIEIIKPGLLVSNEETNI-DDLQDGTFGVNSDN 239
S+ +TN +YL+RYAK + S QR EI K L+ E T D LQ + +
Sbjct: 169 DSKTTSCISTNMIYLSRYAKP-LGSQQRFEICKEDSLLEQEATPAGDSLQSES----TKE 223
Query: 240 DVSIHDYLPAMKAICDKLEEASGRV 264
D I D+LPAM+AICDKLEE + +V
Sbjct: 224 DTLIKDFLPAMQAICDKLEETNEKV 248
>AT1G59453.1 | chr1:21846902-21853384 REVERSE LENGTH=1730
Length = 1729
Score = 147 bits (372), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 30/264 (11%)
Query: 1 MDALVSAALEEVSARLSAGIPVTDXXXXXXXXXXXXXXPIGPAVKRAVWARLIVLPVISV 60
MD+++S AL+E+ ++ + GIP+ P+ ++K VW L+ +P +
Sbjct: 1 MDSIISTALDEICSQGNTGIPLV--------TLWSRLSPLSSSIKTHVWRNLLTIPQLQF 52
Query: 61 VLGXXXXXXXGPVVDDPKVGVEDAERLGMRLVASAALRDNFLGMYDLRHSKSEMSAVQKK 120
D ++DA RL +R+VA+ LR NF+G+YD + + + + A+Q++
Sbjct: 53 KTKKNTVYGSS---DTSIQNLDDALRLDLRIVANENLRANFVGLYDTQSNNTTIPAIQRR 109
Query: 121 ALQRVGASRTSGVTQNDLCKSFGMEGNNFHYIVQSLQSQKLIVRRSTIIKFKGNGAEKED 180
L+R+ +R +G QN L K FG++G NF Y V+ L+S+ LIVR+ I++ KE
Sbjct: 110 VLERLAIARDNGDAQNLLAKEFGIDGRNFFYSVKQLESRGLIVRQPAIVR------TKEV 163
Query: 181 ASQNKRVTNTNSLYLTRYAKDCMNSHQRIEIIKPGLLVSNEETNIDDLQDGTFGVNSDND 240
S+ TN +YLTRYAK M S QR EI K + +E T + D
Sbjct: 164 DSKTTSCITTNMIYLTRYAKP-MGSQQRFEICKEDSVSEHETT------------AAGED 210
Query: 241 VSIHDYLPAMKAICDKLEEASGRV 264
I+D+LPAM+ +CDKLE+A+ +V
Sbjct: 211 TLINDFLPAMQEVCDKLEKANDKV 234
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,339,775
Number of extensions: 204154
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 2
Length of query: 288
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,419,801
Effective search space: 1599762190
Effective search space used: 1599762190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)