BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0569400 Os05g0569400|AK100553
(195 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G61610.1 | chr3:22799480-22801029 FORWARD LENGTH=318 261 2e-70
AT5G57330.1 | chr5:23218392-23220664 FORWARD LENGTH=313 237 2e-63
AT4G23730.1 | chr4:12362955-12364792 FORWARD LENGTH=307 227 4e-60
AT3G01590.2 | chr3:226647-228346 FORWARD LENGTH=307 211 2e-55
AT5G14500.1 | chr5:4674503-4676368 REVERSE LENGTH=307 208 1e-54
AT4G25900.1 | chr4:13161487-13163397 FORWARD LENGTH=319 176 6e-45
AT5G66530.1 | chr5:26553821-26555575 REVERSE LENGTH=308 85 3e-17
>AT3G61610.1 | chr3:22799480-22801029 FORWARD LENGTH=318
Length = 317
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 122/159 (76%), Positives = 139/159 (87%)
Query: 34 FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKA 93
F +AIFKPPK+MRGGI IC+PQFG+ G+L+QHGFARN+IW +DE PPLN N++ K+
Sbjct: 58 FTSNKAIFKPPKSMRGGIQICYPQFGDCGSLDQHGFARNKIWVIDENPPPLNSNESLGKS 117
Query: 94 SVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSV 153
VDL+LKPSEDDLK WPH FEFRLRVSL DG+L+L SRIRN+NGKPFSFSF YHTYLSV
Sbjct: 118 FVDLLLKPSEDDLKQWPHSFEFRLRVSLAVDGDLTLTSRIRNINGKPFSFSFAYHTYLSV 177
Query: 154 SDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEV 192
SDISEVRIEGLETLDYLDNLSQR+ TEQGDAITFESE+
Sbjct: 178 SDISEVRIEGLETLDYLDNLSQRQLLTEQGDAITFESEM 216
>AT5G57330.1 | chr5:23218392-23220664 FORWARD LENGTH=313
Length = 312
Score = 237 bits (605), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/163 (70%), Positives = 132/163 (80%), Gaps = 3/163 (1%)
Query: 35 LDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKAS 94
L +AIFKPPK +RGGIP+CFPQF N GTLE HGFARNRIW ++ PPL N +S A
Sbjct: 53 LSSKAIFKPPKPIRGGIPLCFPQFSNFGTLESHGFARNRIWEVEANPPPLPLNSCSS-AF 111
Query: 95 VDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVN--GKPFSFSFGYHTYLS 152
VDLIL+P+EDDLK WP+ FEFRLR++L +G L+L SRIRN N GKPF+F+F YHTY S
Sbjct: 112 VDLILRPTEDDLKIWPNNFEFRLRIALGTEGELTLTSRIRNTNSDGKPFTFTFAYHTYFS 171
Query: 153 VSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVKNV 195
VSDISEVR+EGLETLDYLDNL RERFTEQGDAITFESEV +
Sbjct: 172 VSDISEVRVEGLETLDYLDNLKDRERFTEQGDAITFESEVDKI 214
>AT4G23730.1 | chr4:12362955-12364792 FORWARD LENGTH=307
Length = 306
Score = 227 bits (578), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/193 (57%), Positives = 140/193 (72%), Gaps = 12/193 (6%)
Query: 4 NLNCFTVSIWETEEIFSILFHGSFTGFNTQFLDVQAIFKPPKAMRGGIPICFPQFGNSGT 63
+L+ V W+T++ +LF+ + +A KPP +RGGIPICFPQFG G+
Sbjct: 40 SLHGGQVLSWKTDKGDELLFNST-----------KANLKPPHPVRGGIPICFPQFGTRGS 88
Query: 64 LEQHGFARNRIWALDEEHPPLNQNDNNSKASVDLILKPS-EDDLKCWPHGFEFRLRVSLT 122
LEQHGFARN++W ++ P L D+ KA VDL+LK S ED ++ WP+ FEF LRVSL
Sbjct: 89 LEQHGFARNKMWLVENNPPALPSFDSTGKAYVDLVLKSSDEDTMRIWPYSFEFHLRVSLA 148
Query: 123 KDGNLSLVSRIRNVNGKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQ 182
DGNL+L+SR+RN+N KPFSFS YHTY S+SDISEVR+EGLETLDYLDN+ RERFTEQ
Sbjct: 149 LDGNLTLISRVRNINSKPFSFSIAYHTYFSISDISEVRLEGLETLDYLDNMHDRERFTEQ 208
Query: 183 GDAITFESEVKNV 195
GDA+TFESE+ V
Sbjct: 209 GDALTFESEIDRV 221
>AT3G01590.2 | chr3:226647-228346 FORWARD LENGTH=307
Length = 306
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/181 (56%), Positives = 131/181 (72%), Gaps = 9/181 (4%)
Query: 21 ILFHGSFTGFNTQ------FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRI 74
+LF G + + ++ +A +KPPKA+RGGIP+CFPQFGN G LE+HGFARN+
Sbjct: 28 LLFGGQVISWKNERREELLYMSSKAQYKPPKAIRGGIPVCFPQFGNFGGLERHGFARNKF 87
Query: 75 WALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIR 134
W+ DE+ PL N ++SVDLILK +EDDLK WPH FE R+R+S++ G L+L+ R+R
Sbjct: 88 WSHDEDPSPLPPA--NKQSSVDLILKSTEDDLKTWPHSFELRIRISISP-GKLTLIPRVR 144
Query: 135 NVNGKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVKN 194
N++ K FSF F YL VSDISEVR+EGLETLDYLDNL +ERFTEQ DAITF+ EV
Sbjct: 145 NIDSKAFSFMFALRNYLYVSDISEVRVEGLETLDYLDNLIGKERFTEQADAITFDGEVDR 204
Query: 195 V 195
V
Sbjct: 205 V 205
>AT5G14500.1 | chr5:4674503-4676368 REVERSE LENGTH=307
Length = 306
Score = 208 bits (530), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/181 (55%), Positives = 129/181 (71%), Gaps = 9/181 (4%)
Query: 21 ILFHGSFTGFNTQ------FLDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRI 74
+L+ G + + ++ +A KPPKA+RGG+PI FPQFGN G LE+HGFARNR
Sbjct: 28 LLYGGQVVSWKNERREKLLYMSTKAQLKPPKAIRGGLPISFPQFGNFGALERHGFARNRF 87
Query: 75 WALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIR 134
W+LD + PL N +++VDL+LK +EDDLK WPH FE R+R+S++ G L+++ R+R
Sbjct: 88 WSLDNDPSPLPPA--NQQSTVDLVLKSTEDDLKIWPHSFELRVRISISP-GKLTIIPRVR 144
Query: 135 NVNGKPFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVKN 194
N + K FSF F YL VSDISEVR+EGLETLDYLDNL +RERFTEQ DAITF+ EV
Sbjct: 145 NTDTKAFSFMFSLRNYLYVSDISEVRVEGLETLDYLDNLMRRERFTEQADAITFDGEVDK 204
Query: 195 V 195
V
Sbjct: 205 V 205
>AT4G25900.1 | chr4:13161487-13163397 FORWARD LENGTH=319
Length = 318
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Query: 35 LDVQAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKAS 94
+ +AIF+PP +RGGIP+ FPQ+ N+G L HGF R R W ++ + PPL + S A
Sbjct: 76 MSSKAIFQPPTPIRGGIPVLFPQYSNTGPLPSHGFVRQRFWEVETKPPPL---PSLSTAH 132
Query: 95 VDLILKPSEDDLKCWPHGFEFRLRVSLTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSVS 154
VDLI++ S +DLK WPH FE+RLRV+L DG+L+L SR++N + KPF+F+F H Y +VS
Sbjct: 133 VDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTSRVKNTDTKPFNFTFALHPYFAVS 192
Query: 155 DISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEV 192
+ISE+ +EGL LDYLD R RFT+ ITF +++
Sbjct: 193 NISEIHVEGLHNLDYLDQQKNRTRFTDHEKVITFNAQL 230
>AT5G66530.1 | chr5:26553821-26555575 REVERSE LENGTH=308
Length = 307
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 4 NLNCFTVSIWETEEIFSILFHGSFT------GFNTQFLDVQAIFKPPKAMRGGIPICFPQ 57
NL ++ + E LF G T G + F+ A+F K + GGIP CFPQ
Sbjct: 44 NLPKLVLTSPQNSEAEIYLFGGCITSWKVASGKDLLFVRPDAVFNKIKPISGGIPHCFPQ 103
Query: 58 FGNSGTLEQHGFARNRIWALDEEHPPLNQNDNNSKASVDLILKPSEDDLKCWPHGFEFRL 117
FG G ++QHGF RN W++ + N +DN A+V L LK W F+
Sbjct: 104 FG-PGLIQQHGFGRNMDWSVVDSQ---NADDN---AAVTLELKDGPYSRAMWDFAFQALY 156
Query: 118 RVSLTKDGNLSLVSRIRNVNGKPFSFSFGYHTYLSVSDI-SEVR-IEGLETLDYLDNLSQ 175
+V + D +LS +I N + KPFSFS HTY S + VR ++G +TL+ +
Sbjct: 157 KVIVGAD-SLSTELKITNTDDKPFSFSTALHTYFRASSAGASVRGLKGCKTLNKDPDPKN 215
Query: 176 RERFTEQGDAITFESEVKNV 195
E DA+TF V V
Sbjct: 216 PIEGKEDRDAVTFPGFVDTV 235
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,688,088
Number of extensions: 203203
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)