BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0568600 Os05g0568600|AK063781
(231 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23710.1 | chr1:8385363-8386250 FORWARD LENGTH=296 59 2e-09
AT5G62770.1 | chr5:25210564-25211370 FORWARD LENGTH=269 56 1e-08
AT1G70420.1 | chr1:26539840-26540658 REVERSE LENGTH=273 55 3e-08
AT3G27880.1 | chr3:10338429-10339157 FORWARD LENGTH=243 53 1e-07
>AT1G23710.1 | chr1:8385363-8386250 FORWARD LENGTH=296
Length = 295
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 12/121 (9%)
Query: 53 VYPVFGRPRSPPPVQEVEEPDTATV----RVPLGQLLLEERASAPPSGEQADEDGVLDGV 108
V+P+F R E ++ D +V R L +L +E+R +G+ + +G +
Sbjct: 91 VFPLFNRDLLFEYENEDDKNDNVSVTDENRPRLRKLFVEDRNG---NGDGEETEGS-EKE 146
Query: 109 PAETYCLWSPGSPAPAVSNSPARCQKSGSTGSVLRWRQR-LIGRSHSDGKEKFVFLSSGS 167
P YC W+ G+ A A SP C+KS STG WR R L+ RS+SDG++ FVFL++ +
Sbjct: 147 PLGPYCSWTGGTVAEA---SPETCRKSNSTGFSKLWRFRDLVLRSNSDGRDAFVFLNNSN 203
Query: 168 D 168
D
Sbjct: 204 D 204
>AT5G62770.1 | chr5:25210564-25211370 FORWARD LENGTH=269
Length = 268
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 85 LLEERASAPPSGEQADEDGVLDGVPAETYCLWSPGSPAPA------VSNSPARCQ-KSGS 137
+ E+R A S +A+ED L GVP ETYC+W P +S+SP+ + KS S
Sbjct: 119 MSEDRDPASNSSSEAEED--LTGVPPETYCVWKPKQSNSGDDDLQRLSSSPSHSKIKSHS 176
Query: 138 TGSVLRWRQR--LIGRSHSDGKEKFVFLSSGSDVRSKXXXXXXXXXXXXXXXXXXXXXXX 195
G RW+ R L RS S+G +K VF + K
Sbjct: 177 AGFSKRWKLRNLLYVRSSSEGNDKLVFPAPV----KKNDETVSDQREEEEPPSKVDGEEE 232
Query: 196 XXXXXXXXXPSFLPYKQDLVGLFANAGAFRRSYHPF 231
+++PY++D++G+ N R PF
Sbjct: 233 GREREETKRQTYVPYRKDMIGILKNVNGLSRHLRPF 268
>AT1G70420.1 | chr1:26539840-26540658 REVERSE LENGTH=273
Length = 272
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 26 ESDEEDFTFXXXXXVTCVVGGGRI---GAV--VYPVFGRPRSPPPVQEVEEPDTATVRVP 80
E EEDF+F + G + VYP+F R ++P+ T+R P
Sbjct: 60 EGREEDFSFASVNADNSPITADEAFEDGQIRPVYPLFNRNIF------FDDPEEKTLRSP 113
Query: 81 LGQLLLEERASAPPSGEQADEDGVLDGVPAETYCLWSPGSPAPAVSNSPARCQKSGSTGS 140
L +L +E + E D V YC W+ + A SP C+KS STG
Sbjct: 114 LKKLFVESTTTEEEEEES-------DTVGP--YCSWTNRTVEQA---SPETCRKSNSTGF 161
Query: 141 VLRWRQR-LIGRSHSDGKEKFVFLSSG 166
WR R L+ RS+SDGK+ FVFLS+G
Sbjct: 162 SKLWRFRDLVLRSNSDGKDAFVFLSNG 188
>AT3G27880.1 | chr3:10338429-10339157 FORWARD LENGTH=243
Length = 242
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 81/198 (40%), Gaps = 23/198 (11%)
Query: 50 GAVVYPVFGRPRSPPPVQEVEEPDTATVRVPLGQLLLEERASAPPSGE-------QADED 102
G +V+PVF + V P+ +PL L L ER P + + +ED
Sbjct: 52 GGLVFPVFNKNLISGDVS----PEKV---IPLKDLFLRERNDQQPPQQTYSSSSDEEEED 104
Query: 103 GVLDGVPAETYCLWSPG------SPAPAVSNSPARCQKSGSTGSVLRWRQR-LIGRSHSD 155
D +P+E YC W+P SP+ S + S ST S RWR R + RS SD
Sbjct: 105 DEFDSIPSEIYCPWTPARSTADMSPSGGCRKSKSTGSSSTSTWSTKRWRLRDFLKRSKSD 164
Query: 156 GKEKFVFL--SSGSDVRSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSFLPYKQD 213
GK+ FL ++ D S+LPYKQD
Sbjct: 165 GKQSLKFLNPTNRDDDDESSKSKKKVSVSVTVSAHEKFYLRNKAIKEEDKRKSYLPYKQD 224
Query: 214 LVGLFANAGAFRRSYHPF 231
LVGLF+N + +++ PF
Sbjct: 225 LVGLFSNIHRYGKTFPPF 242
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,321,191
Number of extensions: 173902
Number of successful extensions: 461
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 4
Length of query: 231
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 136
Effective length of database: 8,502,049
Effective search space: 1156278664
Effective search space used: 1156278664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)