BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0568300 Os05g0568300|Os05g0568300
         (179 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27850.1  | chr3:10324905-10325468 FORWARD LENGTH=188           92   1e-19
AT3G27830.1  | chr3:10318576-10319151 FORWARD LENGTH=192           92   1e-19
AT3G27840.1  | chr3:10323354-10323935 FORWARD LENGTH=194           74   3e-14
AT3G06040.1  | chr3:1824516-1825076 REVERSE LENGTH=187             54   4e-08

>AT3G27850.1 | chr3:10324905-10325468 FORWARD LENGTH=188
          Length = 187

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 52  KVLELGDAIAGLTLEEARGLVDHLQERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTE 111
           K+ ++G  I+ LTLEEAR LVD+LQ++                             E+TE
Sbjct: 61  KIEKIGSEISSLTLEEARILVDYLQDKF-GVSPLSLAPAAAAVAAPADGGAAAVVEEQTE 119

Query: 112 FDVVIEEVPSSARIATIKVVRALTNLALKEAKDLIEGLPXXXXXXXXXXXXXXXXXXXXX 171
           FDVVI EVPSS+RIA IK VRALT+LALKEAK+LIEGLP                     
Sbjct: 120 FDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEE 179

Query: 172 VGAKVSIA 179
            GAKVSIA
Sbjct: 180 AGAKVSIA 187



>AT3G27830.1 | chr3:10318576-10319151 FORWARD LENGTH=192
          Length = 191

 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 52  KVLELGDAIAGLTLEEARGLVDHLQERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTE 111
           K+ ++G  I+ LTLEEAR LVD+LQ++                             E+TE
Sbjct: 65  KIEKIGSEISSLTLEEARILVDYLQDKF-GVSPLSLAPAAAAVAAPADGGAAAVVEEQTE 123

Query: 112 FDVVIEEVPSSARIATIKVVRALTNLALKEAKDLIEGLPXXXXXXXXXXXXXXXXXXXXX 171
           FDVVI EVPSS+RIA IK VRALT+LALKEAK+LIEGLP                     
Sbjct: 124 FDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEE 183

Query: 172 VGAKVSIA 179
            GAKVSIA
Sbjct: 184 AGAKVSIA 191



>AT3G27840.1 | chr3:10323354-10323935 FORWARD LENGTH=194
          Length = 193

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 1/134 (0%)

Query: 46  TAASSPK-VLELGDAIAGLTLEEARGLVDHLQERLXXXXXXXXXXXXXXXXXXXXXXXXX 104
           +A  +PK + ++G  I+ LTLEE+R LVD++Q++                          
Sbjct: 59  SAVKTPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGGATA 118

Query: 105 XXXEKTEFDVVIEEVPSSARIATIKVVRALTNLALKEAKDLIEGLPXXXXXXXXXXXXXX 164
               +T FDVVI +VP   RIA I  +RA+T+L+L E+K+LIEG P              
Sbjct: 119 SVERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEE 178

Query: 165 XXXXXXXVGAKVSI 178
                   GAKVSI
Sbjct: 179 DKTQLEEAGAKVSI 192



>AT3G06040.1 | chr3:1824516-1825076 REVERSE LENGTH=187
          Length = 186

 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%)

Query: 50  SPKVLELGDAIAGLTLEEARGLVDHLQERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXEK 109
           S K++EL + IA L+ EE + +   L E L                            EK
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVEEKKEK 116

Query: 110 TEFDVVIEEVPSSARIATIKVVRALTNLALKEAKDLIEGLP 150
           T FDV +E+  +S +I  IK VR  T+L LKEAK+L+E +P
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVP 157



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.126    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,855,865
Number of extensions: 40546
Number of successful extensions: 84
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 5
Length of query: 179
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 87
Effective length of database: 8,584,297
Effective search space: 746833839
Effective search space used: 746833839
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)