BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0568100 Os05g0568100|AK069724
(172 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22220.1 | chr4:11759444-11760881 REVERSE LENGTH=168 232 8e-62
AT4G04080.1 | chr4:1963386-1964308 FORWARD LENGTH=172 209 5e-55
AT3G01020.1 | chr3:5139-5893 FORWARD LENGTH=164 191 2e-49
>AT4G22220.1 | chr4:11759444-11760881 REVERSE LENGTH=168
Length = 167
Score = 232 bits (591), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 106/128 (82%), Positives = 120/128 (93%)
Query: 41 YHERVVDHYDNPRNVGTFDKDDPDVGTGLVGAPACGDVMKLQIRVDEESGRIVDACFKTF 100
YHE V+DHYDNPRNVG+FDK+DP+VGTGLVGAPACGDVMKLQI+VDE++G+IVDA FKTF
Sbjct: 29 YHENVIDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKVDEKTGQIVDARFKTF 88
Query: 101 GCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 160
GCGSAIASSSVA+EWVKGK MED +IKN+EIAKHLSLPPVKLHCSMLAEDAIKAAVKDY
Sbjct: 89 GCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 148
Query: 161 EAKKAKLD 168
+ K+ K +
Sbjct: 149 KEKRVKTN 156
>AT4G04080.1 | chr4:1963386-1964308 FORWARD LENGTH=172
Length = 171
Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 115/131 (87%), Gaps = 4/131 (3%)
Query: 41 YHERVVDHYDNPRNVGTFDKDDPDVGTGLVGAPACGDVMKLQIRVDEESGRIVDACFKTF 100
YH V+DHYDNPRNVG+FDK+DP+VGTGLVGAP CGDVMKLQ++ D SG+I+DA FKTF
Sbjct: 28 YHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAPQCGDVMKLQVKFDG-SGQIIDAKFKTF 86
Query: 101 GCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 160
GCGSAIA+SSVA+EWVKGK +E+ +IKNS+IAKHLSLPPVKLHCSMLAEDAIKAA+K+Y
Sbjct: 87 GCGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIKNY 146
Query: 161 EAKKAKLDKGN 171
K K DK N
Sbjct: 147 ---KEKQDKAN 154
>AT3G01020.1 | chr3:5139-5893 FORWARD LENGTH=164
Length = 163
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 117/128 (91%), Gaps = 1/128 (0%)
Query: 41 YHERVVDHYDNPRNVGTFDKDDPDVGTGLVGAPACGDVMKLQIRVDEESGRIVDACFKTF 100
YHE V+DH++NPRNVG+F+++DP+VGTGLVGAPACGD+M LQI+VD+ SG+I+D FKTF
Sbjct: 27 YHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDD-SGQIIDTRFKTF 85
Query: 101 GCGSAIASSSVASEWVKGKQMEDAASIKNSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 160
GCGSAIASSSVASEW+KGK +++ +IKN+EIAKHL LPPVKLHCSMLAEDAIK+AV+DY
Sbjct: 86 GCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVRDY 145
Query: 161 EAKKAKLD 168
+ K+AK +
Sbjct: 146 KEKQAKTN 153
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,184,882
Number of extensions: 118191
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 3
Length of query: 172
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 80
Effective length of database: 8,584,297
Effective search space: 686743760
Effective search space used: 686743760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)