BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0565100 Os05g0565100|AK063277
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30890.1 | chr2:13147774-13149663 FORWARD LENGTH=258 189 9e-49
AT4G18260.1 | chr4:10093524-10097337 REVERSE LENGTH=546 187 6e-48
AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395 64 1e-10
AT5G54830.1 | chr5:22273394-22276117 FORWARD LENGTH=908 59 3e-09
AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394 58 5e-09
AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403 57 7e-09
AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396 56 2e-08
AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405 53 2e-07
AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405 52 3e-07
>AT2G30890.1 | chr2:13147774-13149663 FORWARD LENGTH=258
Length = 257
Score = 189 bits (481), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
Query: 47 ELTPKLSLQLKLHAFLLWSSVGFLMPIGVLLIRVTS-NVKSTRSIRILFYCHVASQIVAV 105
+L PKL ++K+H F+LW+++G LMPIG++ IR+ S + ++R LF+ HV SQ+VAV
Sbjct: 44 KLNPKLVYEIKVHGFMLWAAMGVLMPIGIISIRLMSIKDQPIITLRRLFFLHVTSQMVAV 103
Query: 106 ILATAGAVLSISNFENAFNNTHQRIGLALYGFIWLQPLIGFLRPDRGVRFRSIWYLTHWL 165
IL T GAV+S+ NF N+F+N HQ++G+ LY +W Q L+GFLRP R + R W++ HW+
Sbjct: 104 ILVTIGAVMSVINFNNSFSNHHQQLGIGLYVIVWFQALLGFLRPPREEKARRKWFVGHWI 163
Query: 166 LGIAICVVGVANVYIGMHTYHERTGRSVRPWTVLLTVEVSAMAFVYLFQDRWNHV 220
LG +I ++G+ N+Y G+H Y ++T +S WT+L T ++S +A VYLFQD+W+++
Sbjct: 164 LGTSIAILGIINIYTGLHAYAKKTSKSANLWTILFTAQLSCIALVYLFQDKWSYI 218
>AT4G18260.1 | chr4:10093524-10097337 REVERSE LENGTH=546
Length = 545
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 134/232 (57%), Gaps = 4/232 (1%)
Query: 32 SPDSLNQSYKIVQPLELTPKLSLQLKLHAFLLWSSVGFLMPIGVLLIRVTSNVKSTR-SI 90
SP +L + Q +L+ ++ +KLH LLW S+GFLMP+G+L IR+ + +
Sbjct: 38 SPSNLKTKGSLEQD-KLSHQMINSIKLHGILLWVSMGFLMPVGILFIRMANKAHENGIKV 96
Query: 91 RILFYCHVASQIVAVILATAGAVLSISNFENAFNNTHQRIGLALYGFIWLQPLIGFLRPD 150
++ FY HV QI+AV+LAT GA+LS+ EN+F+N HQR+GLALY +WLQ L G +P
Sbjct: 97 KVFFYLHVIFQILAVVLATIGAILSLRTLENSFDNNHQRLGLALYAAMWLQFLTGVFKPS 156
Query: 151 RGVRFRSIWYLTHWLLGIAICVVGVANVYIGMHTYHERT--GRSVRPWTVLLTVEVSAMA 208
RG + R W+L HW+LG + +VG+ N+Y G+ Y ++T R WT+L TV+V+ +
Sbjct: 157 RGSKRRLRWFLLHWILGTIVSIVGIVNIYTGIQAYQKKTSLSRDSSLWTILFTVQVTCLV 216
Query: 209 FVYLFQDRWNHVVRXXXXXXXXXXXXXXXXXXXXXXXHVYPANDHKEVAVVP 260
F YL+QD+W H + V NDH++ +VP
Sbjct: 217 FFYLYQDKWEHFQKQRVVLDELDHQNNNTNGRNNQSIQVVTRNDHEQKVMVP 268
>AT4G12980.1 | chr4:7589670-7591074 REVERSE LENGTH=395
Length = 394
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 57 KLHAFLLWSSVGFLMPIGVLLIRVTSNVKSTRSIRILFYCHVASQIVAVILATAGAVLSI 116
+H L S G L PIG ++ R +S FY HV+ Q A ++ AG +
Sbjct: 219 NIHGILNAVSWGLLFPIGAMIARYMRIFESADPA--WFYLHVSCQFSAYVIGVAGWATGL 276
Query: 117 ---SNFENAFNNTHQRIGLALYGFIWLQPLIGFLRPDRGVRFRSIWYLTHWLLGIAICVV 173
S + NTH+ IG+ L+ LQ LRP + +FR +W + H +G +I ++
Sbjct: 277 KLGSESKGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSILIL 336
Query: 174 GVANVYIGM------HTY 185
G+ NV+ G+ HTY
Sbjct: 337 GIINVFKGLSILNPKHTY 354
>AT5G54830.1 | chr5:22273394-22276117 FORWARD LENGTH=908
Length = 907
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 47 ELTPKLSLQLKLHAFLLWSSVGFLMPIGVLLIRVTSNVKSTRSIRILFYCHVASQIVAVI 106
E L L +H F+++ + G L+P G+L R ++K +I Y S + V
Sbjct: 677 EADQDLRPVLGVHGFMMFLAWGILLPGGILSARYLKHIKGDGWFKIHMYLQ-CSGLAIVF 735
Query: 107 LATAGAVLSISNFENAFNNTHQRIGLALYGFIWLQPLIGFLRPDRGVRF------RSIWY 160
L AV ++ F +F++TH + G QP+ +LRP + + R IW
Sbjct: 736 LGLLFAVAELNGF--SFSSTHVKFGFTAIVLACAQPVNAWLRPAKPAQGELISSKRLIWE 793
Query: 161 LTHWLLGIAICVVGVANVYIGMHTYHERTG 190
+H ++G + VVGV ++ GM ER G
Sbjct: 794 YSHSIVGQSAVVVGVVALFTGMKHLGERNG 823
>AT3G25290.1 | chr3:9208955-9210353 FORWARD LENGTH=394
Length = 393
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 37 NQSYKIVQPLELTPKLSLQLKLHAFLLWSSVGFLMPIGVLLIRVTSNVKSTRSIRILFYC 96
N I E+ K+ +H L S G L PIG ++ R S FY
Sbjct: 199 NSGGTISGGDEVNAKIK-NRNIHGILNAVSWGILFPIGAIIARYMRVFDSADPA--WFYL 255
Query: 97 HVASQIVAVILATAG--AVLSISNFENAFN-NTHQRIGLALYGFIWLQPLIGFLRPDRGV 153
HV+ Q A ++ AG L + N + H+ IG+AL+ +Q LRP +
Sbjct: 256 HVSCQFSAYVIGVAGWATGLKLGNESEGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDH 315
Query: 154 RFRSIWYLTHWLLGIAICVVGVANVYIGMH 183
++R W + H +G AI +G+ NV+ G++
Sbjct: 316 KYRFYWNIYHHGVGYAILTLGIINVFKGLN 345
>AT4G17280.1 | chr4:9678887-9680277 REVERSE LENGTH=403
Length = 402
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 57 KLHAFLLWSSVGFLMPIGVLLIRVTSNVKSTRSIRILFYCHVASQIVAVILATAGAVLSI 116
+H L S G +MP+G ++ R KS FY HV Q A I+ AG +
Sbjct: 217 NIHGILNGVSWGIMMPLGAIIARYLRVAKSADPA--WFYIHVFCQASAYIIGVAGWATGL 274
Query: 117 ---SNFENAFNNTHQRIGLALYGFIWLQPLIGFLRPDRGVRFRSIWYLTHWLLGIAICVV 173
+ +TH+ IG+AL+ +Q FLRP + R W + H +G I ++
Sbjct: 275 KLGGDSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTIIIL 334
Query: 174 GVANVYIGM 182
GV NV+ G+
Sbjct: 335 GVVNVFKGL 343
>AT5G47530.1 | chr5:19281471-19282870 FORWARD LENGTH=396
Length = 395
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 5/129 (3%)
Query: 57 KLHAFLLWSSVGFLMPIGVLLIRVTSNVKSTRSIRILFYCHVASQIVAVILATAG--AVL 114
+H L S G +MPIG ++ R KS FY HV Q A I+ AG L
Sbjct: 209 NIHGILNGVSWGIMMPIGAIIARYLKVSKSADPA--WFYLHVFCQSSAYIIGVAGWATGL 266
Query: 115 SISNFENAFNNT-HQRIGLALYGFIWLQPLIGFLRPDRGVRFRSIWYLTHWLLGIAICVV 173
+ N T H+ +G+AL+ +Q FLRP ++R W + H +G ++ ++
Sbjct: 267 KLGNESAGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSVIIL 326
Query: 174 GVANVYIGM 182
V NV+ G+
Sbjct: 327 AVVNVFKGL 335
>AT5G35735.1 | chr5:13900913-13902934 REVERSE LENGTH=405
Length = 404
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 59 HAFLLWSSVGFLMPIGVLLIRVTSNVKSTRSIRILFYCHVASQIVAVILATAGAVLSI-- 116
H L S G LMP+G ++ R FY H+A Q+ ++ AG I
Sbjct: 211 HGVLNAVSWGVLMPMGAMMARYMKVFADP----TWFYLHIAFQVSGYVIGVAGWATGIKL 266
Query: 117 -SNFENAFNNTHQRIGLALYGFIWLQPLIGFLRPDRGVRFRSIWYLTHWLLGIAICVVGV 175
++ +TH+ +G+AL+ F LQ +RP ++R+ W + H +G ++ +
Sbjct: 267 GNDSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTYWNVYHHTVGYTTIILSI 326
Query: 176 ANVYIGM 182
N++ G
Sbjct: 327 VNIFKGF 333
>AT2G04850.1 | chr2:1704298-1705608 FORWARD LENGTH=405
Length = 404
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 66 SVGFLMPIGVLLIRVTSNVKSTRSIRILFYCHVASQIVAVILATAGAVLSISNFENAFNN 125
S GFL+P G + R ++S FY H A Q+ +L T G + I N+
Sbjct: 226 SWGFLLPAGAVTARYLRQMQSIGPT--WFYIHAAIQLTGFLLGTIGFSIGIVLGHNSPGV 283
Query: 126 T---HQRIGLALYGFIWLQPLIGFLRPDRGVRFRSIWYLTHWLLGIAICVVGVANVYIGM 182
T H+ +G+A + LQ L RP +FR W H +G A V+GV NV+ G
Sbjct: 284 TYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVVMGVVNVFQGF 343
Query: 183 HTYHERTGRS 192
E GRS
Sbjct: 344 EVLRE--GRS 351
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,833,918
Number of extensions: 178494
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 12
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)