BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0562200 Os05g0562200|AK061766
(226 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224 118 2e-27
AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223 102 2e-22
AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212 94 5e-20
AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201 84 5e-17
AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222 56 2e-08
>AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224
Length = 223
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 1 MDSEHWISRLAAAKRFYAAQLGHADRA----GMEEVDMDEEVRPEFACPYCYEDHDVVSL 56
MDS+ W RLA+A R Y QL R+ G EE+D +EE R EFACP+C + D+VSL
Sbjct: 1 MDSDSWSDRLASATRRY--QLAFPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVSL 58
Query: 57 CXXXXXXXXXXXXXXXCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLL 116
C CP+C+ ++ DM+ HIT+QH +FK R+ + LS+L
Sbjct: 59 CCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGGSYSTLSIL 118
Query: 117 SRDLREAHLQVLLGGGGHRXXXXXXXXXXXADPLLSSFGLSFPTSDTEETSKPPISIPDD 176
R+ + + Q L GG ADPLLSSF +S P +D T++ IS +
Sbjct: 119 RREFPDGNFQSLF-GGSSCIVSSSSSSNVAADPLLSSF-IS-PIADGFFTTESCISA--E 173
Query: 177 ASVIKETPAQ--PWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD 226
+K+T Q P ++ +SL+ E+ +QK K R+ FV++LL +T+ D
Sbjct: 174 TGPVKKTTIQCLPEQNAKKTSLSAEDHKQKLK----RSEFVRELLSSTILDD 221
>AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223
Length = 222
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 20/233 (8%)
Query: 1 MDSEHWISRLAAAKRFYAAQLGHADRA----GMEEVDMDEEVRPEFACPYCYEDHDVVSL 56
MDS+ W RLA+A R Y QL R+ G EE++ +++ R E+ACP+C + D+VSL
Sbjct: 1 MDSDSWSDRLASASRRY--QLDFLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVSL 58
Query: 57 CXXXXXXXXXXXXXXXCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQA-LSL 115
C CPIC+ K++ DM+ HIT+QH +FK R+ R+ G+Q+ LS+
Sbjct: 59 CCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK-RKSRRGGAQSMLSI 117
Query: 116 LSRDLREAHLQVLLGGGGHRXXXXXXXXXXXADPLLSSFGLSFPTSDTEETSKPPISIPD 175
L R+ + + Q L G ADPLLSSF +S P +D S+ S+
Sbjct: 118 LKREFPDGNFQSLFEGT--SRAVSSSSASIAADPLLSSF-IS-PMADDFFISES--SLCA 171
Query: 176 DASVIKETPAQ--PWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD 226
D S K+T Q P + SL+ E+ +K KQ+ FVQ +L + + D
Sbjct: 172 DTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQSE----FVQGILSSMILED 220
>AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212
Length = 211
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 26/202 (12%)
Query: 29 MEEVDMDEEVRPEFACPYCYEDHDVVSLCXXXXXXXXXXXXXXXCPICSDKIAKDMLNHI 88
+ +V+ +++++ EF CP+C ++ D+V LC CP+C+ K+ D++ HI
Sbjct: 30 LGDVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHI 89
Query: 89 TVQHGYLFKNRRRLRRFVIPGSQALSL-LSRDLREAHLQVLLGGGGHRXXXXXXXXXXXA 147
T QHG +FK +RR RR G + L L ++LREA+LQ L G +
Sbjct: 90 TTQHGNVFKVQRR-RRLRKGGYSSTYLTLKKELREANLQSLGG-----SSTFIPSSNIDS 143
Query: 148 DPLLSSFGLSFPTSDTEETSKPPISIP--DDASVIKETPAQPWDSSIDS-SLTREEREQK 204
DPLLSSF KPP +IP + SV + +P S I S + E++E+
Sbjct: 144 DPLLSSFMF-----------KPPSAIPITEGDSVAQVSPKDTSKSKIQQESFSNEDQEKA 192
Query: 205 RKQASVRATFVQDLLLTTLFGD 226
+K + FV+ LL +T+ D
Sbjct: 193 KK-----SKFVRGLLWSTMLED 209
>AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201
Length = 200
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 11 AAAKRFYAAQLGHADR-AGMEEVDMDEEVRPEFACPYCYEDHDVVSLCXXXXXXXXXXXX 69
A +KRF A ++ G EE+D D++ + EFACP+C E +D++ LC
Sbjct: 3 ADSKRFLATLRSRSEMLMGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESK 62
Query: 70 XXXCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLLSRDLREAHLQVLL 129
CP+CS K+ D++ H G K+R+ + LSLL ++LRE LQ LL
Sbjct: 63 NAVCPVCSLKVGVDIVAHKRFTMGRKRKSRKS------GTNSTLSLLRKELREGDLQRLL 116
Query: 130 GGGGHRXXXXXXXXXXXADPLLSSFGLSFPTSDTEETSKPPISIPDDASVIKETPAQPWD 189
G DPLLSSF +S S + + ++ +D + E Q +
Sbjct: 117 GFTSR---NGSVASSVTPDPLLSSF-ISPTRSQSSPAPRQTKNVSEDKQI--ERKRQVFI 170
Query: 190 SSIDSSLTREEREQKRKQASVRATFVQDLLLTTLF 224
S + S REER K + FVQ LL + +F
Sbjct: 171 SPV-SLKDREERRHK-------SEFVQRLLSSAIF 197
>AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222
Length = 221
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 23 HADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLCXXXXXXXXXXXXXXXCPICSDKIAK 82
+ D EEVD D + E+ CP+C D+D+V LC CP+CS ++
Sbjct: 30 YQDLEEFEEVDDD--IAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKM 87
Query: 83 DMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRXXXXXXX 142
M++HIT H + K+ ++ + + LS + HL L H
Sbjct: 88 HMVDHITSHHRDVLKSEQKEMSY-----REDPYLSDKYLQPHLDELPPSMNHH----QHP 138
Query: 143 XXXXADPLLSSFGLSFPTSDTEETSKPPISIPDDASVIKETPAQPWDSSIDSSLTREERE 202
+D LS S + T+ + +P D+SV + P + ++ + + + +
Sbjct: 139 SKHVSDQFLSFINNSALPNQTK------LVLP-DSSVEDKNPIKDSSAAKEGTSSCPLSD 191
Query: 203 QKRKQASVRATFVQDLLLTTLFGD 226
+ + + + FVQ LL + +F D
Sbjct: 192 SDKLEKAKKCEFVQGLLSSAMFDD 215
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,330,743
Number of extensions: 152776
Number of successful extensions: 534
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 5
Length of query: 226
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,502,049
Effective search space: 1113768419
Effective search space used: 1113768419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)