BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0557700 Os05g0557700|J013123A19
(82 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33770.1 | chr2:14277785-14281482 REVERSE LENGTH=908 70 3e-13
AT2G16920.1 | chr2:7334559-7338827 REVERSE LENGTH=1103 62 7e-11
AT3G15355.1 | chr3:5183858-5186669 FORWARD LENGTH=610 58 1e-09
AT1G53025.1 | chr1:19757072-19759474 REVERSE LENGTH=544 55 5e-09
AT1G53023.1 | chr1:19754214-19755843 REVERSE LENGTH=317 53 4e-08
>AT2G33770.1 | chr2:14277785-14281482 REVERSE LENGTH=908
Length = 907
Score = 69.7 bits (169), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 38/61 (62%)
Query: 3 VQQLYDVLSFYYTDGIHVRVYEERMDLLRACLVGAAGTPYHDNLXXXXXXXXXXYPHEPP 62
VQQ + L + I+VRV EERMDLLRA LVGA GTPYHD L YPHEPP
Sbjct: 667 VQQEWSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPP 726
Query: 63 V 63
+
Sbjct: 727 M 727
>AT2G16920.1 | chr2:7334559-7338827 REVERSE LENGTH=1103
Length = 1102
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 34/60 (56%)
Query: 3 VQQLYDVLSFYYTDGIHVRVYEERMDLLRACLVGAAGTPYHDNLXXXXXXXXXXYPHEPP 62
V Q + +L DGI VR YE+RMDLLRA +VGA GTPY D L YP PP
Sbjct: 855 VDQDWKILQNNLPDGIFVRAYEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPSVPP 914
>AT3G15355.1 | chr3:5183858-5186669 FORWARD LENGTH=610
Length = 609
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 3 VQQLYDVLSFYYTDGIHVRVYEERMDLLRACLVGAAGTPYHDNLXXXXXXXXXXYPHEPP 62
+Q + +L + I VR YE RMDLLRA ++GA GTPYHD L YP PP
Sbjct: 337 IQDEWRILEKDLPEMIFVRAYESRMDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPSTPP 396
Query: 63 V 63
+
Sbjct: 397 I 397
>AT1G53025.1 | chr1:19757072-19759474 REVERSE LENGTH=544
Length = 543
Score = 55.5 bits (132), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 32/60 (53%)
Query: 3 VQQLYDVLSFYYTDGIHVRVYEERMDLLRACLVGAAGTPYHDNLXXXXXXXXXXYPHEPP 62
VQ + +L + I VR E RMDLLRA ++GA GTPYHD L YP PP
Sbjct: 276 VQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPP 335
>AT1G53023.1 | chr1:19754214-19755843 REVERSE LENGTH=317
Length = 316
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 3 VQQLYDVLSFYYTDGIHVRVYEERMDLLRACLVGAAGTPYHDNLXXXXXXXXXXYPHEPP 62
+Q+ + +L + I VR E R+DLLRA ++GA GTPYHD L YP PP
Sbjct: 62 IQKEWKILDKNLPETIFVRACESRIDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPP 121
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.145 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,601,383
Number of extensions: 45059
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 105 (45.1 bits)