BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0556800 Os05g0556800|AK109887
(394 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30840.1 | chr1:10974581-10975729 FORWARD LENGTH=383 130 1e-30
AT1G28220.1 | chr1:9860303-9861434 REVERSE LENGTH=352 85 6e-17
AT1G28230.1 | chr1:9862200-9864554 REVERSE LENGTH=357 84 1e-16
AT2G33750.1 | chr2:14271794-14273265 REVERSE LENGTH=359 77 1e-14
AT1G44750.1 | chr1:16892688-16895168 FORWARD LENGTH=380 54 2e-07
>AT1G30840.1 | chr1:10974581-10975729 FORWARD LENGTH=383
Length = 382
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 128/299 (42%), Gaps = 12/299 (4%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAGGR--PASAPRPFTWLSRRFLAVCLVIGA 109
++YF +GG +RWV T VQSAGFPLL+ + RPFT + R L ++IG
Sbjct: 47 KYYFVYGGSSRWVSTWVQSAGFPLLLILIYFPHYVLKTTTRRPFTRFTLRHLIFSVLIGL 106
Query: 110 LMGANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXXXXXXXXXXXXX 169
++G NN LF++ + +IV+
Sbjct: 107 VLGFNNFLFSWGTSYLPVSTSSLLLSTQLVFTLILSRIIVKQKITFSNLNCVVLLTLSSV 166
Query: 170 XXXXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSGGFXX 229
S + Y +G+V T+GA LF+ YLPV E +YR
Sbjct: 167 LLALDSSKDKPSGLT------KTKYFIGYVSTIGAGLLFALYLPVTEKLYRTVYCYAMVM 220
Query: 230 XXXXXXXXXXXXXXXXXXXXXXXXXXXDDVSGWVDGGSSPAVYW--AVVATLVLTWQACF 287
+ V P YW A++A +V TWQ F
Sbjct: 221 EVQLVMEFAATVFATIGMACEGGFKEMVKEANHVFT-KGPTFYWTFAILANVV-TWQLSF 278
Query: 288 MGTAGVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFSSYLYG 346
T+G++YLTS + G+CM A+L +NV+GGV +GD FG K ++T LC WGFSSY YG
Sbjct: 279 AATSGMVYLTSGITGGICMTALLAMNVIGGVVAYGDVFGGVKIVSTVLCIWGFSSYTYG 337
>AT1G28220.1 | chr1:9860303-9861434 REVERSE LENGTH=352
Length = 351
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 113/306 (36%), Gaps = 19/306 (6%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAG------GRPASAPRPFTWLSRRFLAVCL 105
R YF +GG+ W T +++AGFP++ L F + R L +
Sbjct: 25 RLYFNNGGKRIWFSTFLETAGFPVIFIPLLFSYITRRRSNNVGDSTSFFLIKPRLLIAAV 84
Query: 106 VIGALMGANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXXXXXXXXX 165
++G L G +N L+AY + +V+H
Sbjct: 85 IVGILSGFDNYLYAYGIAYLPVSTAALIIASQLAFIAIFSFFMVKHKFTPFTINAVVLLT 144
Query: 166 XXXXXXXXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSG 225
+ K Y+ GF++T+ AA +++ LP++EL Y++A
Sbjct: 145 VGAAVLGMHTETDKPVHET------HKQYITGFLITVAAAVMYAFILPLVELAYQKAKQ- 197
Query: 226 GFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVSGWVDGGSS----PAVYWAVVATLVL 281
D A+++ V +
Sbjct: 198 --TMSYTLVLEFQLILCLLASIVSVIGMFIAGDFKALPKEAREFKLGEALFYVVAVFSAI 255
Query: 282 TWQACFMGTAGVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATALCAWGFS 341
WQ F+G G+I+ TSSL SG+ ++ +L + + V + + F AEK L+ AL WGF
Sbjct: 256 IWQGFFLGAIGLIFSTSSLVSGIMISVLLPITEVLAVIFYHEKFQAEKGLSLALSLWGFV 315
Query: 342 SYLYGE 347
SY YGE
Sbjct: 316 SYFYGE 321
>AT1G28230.1 | chr1:9862200-9864554 REVERSE LENGTH=357
Length = 356
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 26/314 (8%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLLVAGALAG-------------GRPASAPRPFTWLSR 98
R YFT+GG+ W ++ + +AGFP+++ L + F +
Sbjct: 25 RLYFTNGGKRIWFMSFLSTAGFPIILIPLLVSFLSRRRSNRNPNNAENKRKTKLFLMETP 84
Query: 99 RFLAVCLVIGALMGANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXX 158
F+A +VIG L G +N L++Y A ++V+
Sbjct: 85 LFIA-SIVIGLLTGLDNYLYSYGLAYLPVSTSSLIIGTQLAFNALFAFLLVKQKFTPFSI 143
Query: 159 XXXXXXXXXXXXXXXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELV 218
S +K Y+VGF++T+ AA L++ LP++EL
Sbjct: 144 NAVVLLTVGIGILALHSDGDKPAKES------KKEYVVGFLMTVVAALLYAFILPLVELT 197
Query: 219 YREAVSG-GFXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXDDVSGWVDGGSSPAVYWA 274
Y++A F + + GGS Y+A
Sbjct: 198 YKKARQEITFPLVLEIQMVMCLAATFFCVIGMFIVGDFKVIAREAREFKIGGS--VFYYA 255
Query: 275 VVATLVLTWQACFMGTAGVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALATA 334
++ + WQ F+G G+++ SSL SGV ++ +L + + V F + F AEK ++
Sbjct: 256 LIVITGIIWQGFFLGAIGIVFCASSLASGVLISVLLPVTEVFAVVCFREKFQAEKGVSLL 315
Query: 335 LCAWGFSSYLYGEY 348
L WGF SY YGE+
Sbjct: 316 LSLWGFVSYFYGEF 329
>AT2G33750.1 | chr2:14271794-14273265 REVERSE LENGTH=359
Length = 358
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 115/316 (36%), Gaps = 28/316 (8%)
Query: 52 RFYFTHGGRNRWVVTLVQSAGFPLL------VAGALAGGRPASAPRPFTWLSRRFLAVCL 105
R YF +GG W + +Q+ G PL+ PF + +
Sbjct: 27 RLYFQNGGERIWFPSFLQTVGCPLIFFPLLLSFLRRRRCLEEQETTPFFLMKPPLFIAAI 86
Query: 106 VIGALMGANNLLFAYXXXXXXXXXXXXXXXXXXXXXXXXAVVIVRHPXXXXXXXXXXXXX 165
V+G L+G +N L++Y A +V+
Sbjct: 87 VVGLLVGFDNYLYSYGLAYIPVSTASLIISAQLGFTALFAFFMVKQKFTPFTINAIVLLT 146
Query: 166 XXXXXXXXRSXXXXXXXXXXXXXXXRKSYLVGFVVTLGAAGLFSAYLPVMELVYREAVSG 225
S K Y+VGF++TLGAA L+ LP++EL Y++ SG
Sbjct: 147 GGAVVLALNSDSDKLANET------HKEYVVGFIMTLGAALLYGFILPLVELSYKK--SG 198
Query: 226 GFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-------------DVSGWV-DGGSSPAV 271
D ++G D ++
Sbjct: 199 QRITYTLALEFQMVLCFAATCVCLVGMLAAGDFKVKHALFIFKNRVIAGEARDFKLGESL 258
Query: 272 YWAVVATLVLTWQACFMGTAGVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKAL 331
Y+ V+ + WQA F+G G+I+ SSL SG+ ++A+L + V+ V F + F A K +
Sbjct: 259 YYVVIVFTAIIWQAFFVGAIGLIFCASSLVSGIMVSALLPVTVILAVICFQEKFQAGKGV 318
Query: 332 ATALCAWGFSSYLYGE 347
A AL WG SY YG+
Sbjct: 319 ALALSLWGSVSYFYGQ 334
>AT1G44750.1 | chr1:16892688-16895168 FORWARD LENGTH=380
Length = 379
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 276 VATLV---LTWQACFMGTAGVIYLTSSLHSGVCMAAVLTLNVLGGVAVFGDPFGAEKALA 332
V TLV +TWQ C +G G+I+L +SL S V L + L + VF D K +A
Sbjct: 282 VLTLVWTAVTWQVCSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVVFRDKMSGVKIMA 341
Query: 333 TALCAWGFSSYLYGEY 348
+ WGF+SY+Y +
Sbjct: 342 MLIAIWGFASYVYQNH 357
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,070,610
Number of extensions: 152011
Number of successful extensions: 442
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 9
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)