BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0555300 Os05g0555300|AK062890
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32590.3  | chr4:15721417-15722781 FORWARD LENGTH=181          161   2e-40
AT3G16250.1  | chr3:5507091-5508320 REVERSE LENGTH=205            127   3e-30

>AT4G32590.3 | chr4:15721417-15722781 FORWARD LENGTH=181
          Length = 180

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/106 (82%), Positives = 99/106 (93%)

Query: 69  QIDLEFVGPKADADGSFPVDRAAAGSGEKLLRDVMVENKIELYAAYGKVMNCGGGGSCGT 128
           +I+LEF GPK  +DGS+PVD+A A SG+KLLR +M +NKIELYAAYGKVMNCGGGGSCGT
Sbjct: 57  EIELEFFGPKPGSDGSYPVDKAKAVSGDKLLRSIMQDNKIELYAAYGKVMNCGGGGSCGT 116

Query: 129 CIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGK 174
           CIVEI+DG++LLNERT+TENRYLKKKPESWRLACQTIVGNKENSGK
Sbjct: 117 CIVEILDGRDLLNERTDTENRYLKKKPESWRLACQTIVGNKENSGK 162



>AT3G16250.1 | chr3:5507091-5508320 REVERSE LENGTH=205
          Length = 204

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 68  PQIDLEFVGPKADADGSFPVDRAAAGSGEKLLRDVMVENKIELYAAYGKVM-NCGGGGSC 126
           P +D  FV      DG+  V    A  G+KL RD+M+++ IELY  Y K + NC G G+C
Sbjct: 68  PAVDFAFVHSVLLPDGTPDVHWRRANGGQKL-RDIMLDSNIELYGPYSKPLSNCAGVGTC 126

Query: 127 GTCIVEIVDGKELLNERTNTENRYLKKKPESWRLACQTIVGNKENSGKVVVQRLPQWK 184
            TC+VEIV+GKELLN RT+ E   LK+KP++WRLACQT VGN +++G VV+Q+LP+WK
Sbjct: 127 ATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNVGNPDSTGLVVIQQLPEWK 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,577,741
Number of extensions: 135207
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)