BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0552200 Os05g0552200|AK064636
         (357 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57500.1  | chr5:23286406-23287525 REVERSE LENGTH=319          236   2e-62

>AT5G57500.1 | chr5:23286406-23287525 REVERSE LENGTH=319
          Length = 318

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/264 (45%), Positives = 161/264 (60%), Gaps = 15/264 (5%)

Query: 94  DNDVRVLIGIQTLPSKYERRNLLRTIYSLQAREQPSLAGSVDVRFVFCNVTSPVDAVLVS 153
           D+++R+LIGI TLP +Y RR+ LR IY  Q          VDV+FVFCN+T     VLV+
Sbjct: 66  DDEIRILIGILTLPDQYSRRHFLRMIYGTQNVPD---GVKVDVKFVFCNLTKEDQKVLVA 122

Query: 154 LEAIRHGDIIVLDCAENMDNGKTYTFFSTVARAFNXXXXXXXXXXXXXXXRYDYVMKADD 213
           LE +R+ DII+L+C ENM+ GKTYT+FS++   FN                Y YVMKADD
Sbjct: 123 LEIMRYDDIIILNCNENMNKGKTYTYFSSLPDIFNETDAQKPP--------YHYVMKADD 174

Query: 214 DTYLRLAALVESLRGAARRDAYYGLQMPCDRENFYPFPPFMSGMGYALSWDLVQWVATAE 273
           DTY+RL +LV SLR   R D YYG  +PC   +  PF  +MSGMGY +SWD+  W+  +E
Sbjct: 175 DTYIRLESLVASLRPLPREDLYYGYVIPCPSMD--PFVHYMSGMGYLVSWDIAVWLKDSE 232

Query: 274 ESRRDHVGPEDMWTGRWLNLASKAKNRYDMSPRMYNYRGASPPSCFRRDFAPDTIAVHML 333
             ++   GPED   G W+    + KNR++    MYN+    PP+    +  PDTIAVH+L
Sbjct: 233 IPKKHLEGPEDKVFGDWIREGRRGKNRFNAKWSMYNF--PEPPTRCTHELWPDTIAVHLL 290

Query: 334 KDAARWAETLRYFNATAALRPSHL 357
           K+  +W  TL YFN T+ L+PS L
Sbjct: 291 KNQEKWIRTLNYFNVTSNLKPSKL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,821,728
Number of extensions: 243349
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,364,969
Effective search space: 2149797033
Effective search space used: 2149797033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)