BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0550300 Os05g0550300|AK062463
(94 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97 82 6e-17
AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103 76 3e-15
AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95 75 6e-15
AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104 75 8e-15
AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99 74 2e-14
AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104 68 9e-13
AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99 61 1e-10
AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100 60 2e-10
AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96 59 4e-10
AT1G07747.1 | chr1:2403558-2403845 FORWARD LENGTH=96 57 2e-09
AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97 57 2e-09
AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104 57 2e-09
AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96 50 2e-07
AT4G12825.1 | chr4:7529471-7529758 FORWARD LENGTH=96 50 2e-07
AT1G43665.1 | chr1:16452981-16453804 REVERSE LENGTH=124 49 6e-07
AT3G29152.1 | chr3:11114112-11114426 REVERSE LENGTH=105 48 1e-06
AT5G38197.1 | chr5:15251024-15251314 FORWARD LENGTH=97 46 3e-06
>AT3G18280.1 | chr3:6267102-6267392 FORWARD LENGTH=97
Length = 96
Score = 82.0 bits (201), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 51/62 (82%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QLSPCA+AI ++ PSA CC+++KEQ+PCLC Y R+P+L+R+V++PN +KV +C +P+P
Sbjct: 35 QLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCKLPIP 94
Query: 93 SC 94
C
Sbjct: 95 RC 96
>AT1G66850.1 | chr1:24936985-24937293 FORWARD LENGTH=103
Length = 102
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QL PC +AI G PS +CC+++ EQQ CLC +A++P +Y++SPN +KVL AC+V P
Sbjct: 41 QLQPCLAAITGGGQPSGACCAKLTEQQSCLCGFAKNPAFAQYISSPNARKVLLACNVAYP 100
Query: 93 SC 94
+C
Sbjct: 101 TC 102
>AT1G48750.1 | chr1:18036019-18036303 FORWARD LENGTH=95
Length = 94
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 49/62 (79%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QL+ CA+A+ ++ PS +CC++++EQQPCLC Y R+P L++YV+SPN +KV +C +P P
Sbjct: 33 QLASCAAAMTSSSPPSEACCTKLREQQPCLCGYMRNPTLRQYVSSPNARKVSNSCKIPSP 92
Query: 93 SC 94
SC
Sbjct: 93 SC 94
>AT5G38170.1 | chr5:15227717-15228028 FORWARD LENGTH=104
Length = 103
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QLS CA+ ++ PS CC ++KEQQPC C Y +DP +YV S N KK LA C VP P
Sbjct: 42 QLSSCATPMLTGVPPSTECCGKLKEQQPCFCTYIKDPRYSQYVGSANAKKTLATCGVPYP 101
Query: 93 SC 94
+C
Sbjct: 102 TC 103
>AT1G73780.1 | chr1:27743872-27744168 FORWARD LENGTH=99
Length = 98
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QLSPC I+ + PS CCS++KEQQ C+CQY ++PN + ++NSPN K + CH P P
Sbjct: 37 QLSPCLETIMKGSEPSDLCCSKVKEQQHCICQYLKNPNFKSFLNSPNAKIIATDCHCPYP 96
Query: 93 SC 94
C
Sbjct: 97 KC 98
>AT5G38160.1 | chr5:15225836-15226147 FORWARD LENGTH=104
Length = 103
Score = 68.2 bits (165), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
QLS C +A+ A PS CC ++KE + CLC Y ++P YV SPN +K LAAC V P
Sbjct: 42 QLSSCVTAVSTGAPPSTDCCGKLKEHETCLCTYIQNPLYSSYVTSPNARKTLAACDVAYP 101
Query: 93 SC 94
+C
Sbjct: 102 TC 103
>AT1G43667.1 | chr1:16465170-16465466 REVERSE LENGTH=99
Length = 98
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
+L PC ++I + PS CC ++KEQ C C Y ++P +Y+ + K++LAAC +P P
Sbjct: 39 ELQPCLPSVIDGSQPSTQCCEKLKEQNSCFCDYLQNPQFSQYITA--AKQILAACKIPYP 96
Query: 93 SC 94
+C
Sbjct: 97 NC 98
>AT2G14846.1 | chr2:6382430-6382729 FORWARD LENGTH=100
Length = 99
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
L C A+ + PS CC ++KEQ CLC Y + P+ +YV+S +KVL AC +P+P
Sbjct: 39 LRVCLPAVEAGSQPSVQCCGKLKEQLSCLCGYLKIPSFTQYVSSGKAQKVLTACAIPIPK 98
Query: 94 C 94
C
Sbjct: 99 C 99
>AT5G38195.1 | chr5:15246991-15247278 FORWARD LENGTH=96
Length = 95
Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
+L PC A+ P+ CC ++ EQ+ CLC Y +P +V+SP +KVL C++P P
Sbjct: 34 ELMPCLPAMTTGGQPTKDCCDKLIEQKECLCGYINNPLYSTFVSSPVARKVLEVCNIPYP 93
Query: 93 SC 94
SC
Sbjct: 94 SC 95
>AT1G07747.1 | chr1:2403558-2403845 FORWARD LENGTH=96
Length = 95
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
L C IIG PS CC+++K+++ C C+Y ++P + Y+ S K+VL AC VPVP
Sbjct: 33 DLKACLPDIIGETPPSTKCCTKLKDKKSCFCEYLKNPLIAPYMTS--AKQVLEACGVPVP 90
Query: 93 SC 94
C
Sbjct: 91 VC 92
>AT1G43666.1 | chr1:16461181-16461471 REVERSE LENGTH=97
Length = 96
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
+ C II + PS CC ++KEQQ CLC Y P++ +Y+ N K+V+ AC +P P
Sbjct: 36 KFQVCKPEIITGSPPSEECCEKLKEQQSCLCAYLISPSISQYIG--NAKRVIRACGIPFP 93
Query: 93 SC 94
+C
Sbjct: 94 NC 95
>AT3G57310.1 | chr3:21208200-21208511 REVERSE LENGTH=104
Length = 103
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 33/61 (54%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
L C AI+ + P A CC +KEQQ CLC Y + P YV N K+LAAC + P
Sbjct: 43 LMSCLPAILKGSQPPAYCCEMLKEQQSCLCGYIKSPTFGHYVIPQNAHKLLAACGILYPK 102
Query: 94 C 94
C
Sbjct: 103 C 103
>AT5G38180.1 | chr5:15229856-15230143 FORWARD LENGTH=96
Length = 95
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
+L PC A+ P+ CC + +Q+ CLC Y ++P + S +KVL C+VP
Sbjct: 34 ELMPCLPAMTKREQPTKDCCENLIKQKTCLCDYIKNPLYSMFTISLVARKVLETCNVPYT 93
Query: 93 SC 94
SC
Sbjct: 94 SC 95
>AT4G12825.1 | chr4:7529471-7529758 FORWARD LENGTH=96
Length = 95
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 34 LSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPS 93
L C SA+ S CC ++KEQQ C C+Y +DP + Y+ K +LAAC + P+
Sbjct: 37 LQICKSAVTTGNPHSKECCEKLKEQQSCFCEYLKDPLVVPYITY--AKIILAACGLSFPN 94
Query: 94 C 94
C
Sbjct: 95 C 95
>AT1G43665.1 | chr1:16452981-16453804 REVERSE LENGTH=124
Length = 123
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 33 QLSPCASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVP 92
L C SA+ PSA CC +K Q+ CLC Y +P++++Y+ +KV AAC +P P
Sbjct: 38 DLQVCLSALETPIPPSAECCKNLKIQKSCLCDYMENPSIEKYLEP--ARKVFAACGMPYP 95
>AT3G29152.1 | chr3:11114112-11114426 REVERSE LENGTH=105
Length = 104
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 47 PSASCCSRMKEQQPCLCQYARDP-NLQRYVNSPNGKKVLAACHVPVPSC 94
P+ CC M E Q CLCQ+ + +Q NSPNG+K AC++P P+C
Sbjct: 56 PTPHCCQVMVEHQTCLCQFIKGVWYVQALFNSPNGQKTCKACNIPFPTC 104
>AT5G38197.1 | chr5:15251024-15251314 FORWARD LENGTH=97
Length = 96
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 37 CASAIIGNASPSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACHVPVPSC 94
C A+ P+ CC+ + Q+ LC Y +P + SP +KVL C++P P+C
Sbjct: 39 CLPAMTTGGQPTKDCCNTLIGQKESLCGYITNPLYYLFFTSPAARKVLEVCNIPYPTC 96
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.129 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,532,844
Number of extensions: 51378
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 17
Length of query: 94
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 30
Effective length of database: 9,351,945
Effective search space: 280558350
Effective search space used: 280558350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)