BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0543400 Os05g0543400|AK073822
         (355 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47770.1  | chr5:19345297-19347415 FORWARD LENGTH=385          506   e-144
AT4G17190.1  | chr4:9648743-9650865 REVERSE LENGTH=343            498   e-141

>AT5G47770.1 | chr5:19345297-19347415 FORWARD LENGTH=385
          Length = 384

 Score =  506 bits (1303), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 236/338 (69%), Positives = 285/338 (84%)

Query: 18  KEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKLLKGT 77
           K  F  +Y VLK +LL DP+FEFT+ SR W+DRMLDYNV GGK NRGLSVVDS+KLLK  
Sbjct: 47  KSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRMLDYNVRGGKLNRGLSVVDSFKLLKQG 106

Query: 78  NVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAINDGII 137
           N L+++++FL+  LGWC+EWLQAYFLVLDDIMD+S TRRGQPCWFRVPQVG +AINDGI+
Sbjct: 107 NDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRVPQVGMVAINDGIL 166

Query: 138 LRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNIGVHR 197
           LRNHI R+L+ HFR K YY DL+DLFNEVE +TA GQ++DLITT EGEKDL KY++ +HR
Sbjct: 167 LRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACGQMIDLITTFEGEKDLAKYSLSIHR 226

Query: 198 RIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGDPKFI 257
           RIVQYKT+YYSFYLPVACALL++GE+L  +  V+++LV MGIYFQVQDDYLDC+ DP+ +
Sbjct: 227 RIVQYKTAYYSFYLPVACALLMAGENLENHIDVKNVLVDMGIYFQVQDDYLDCFADPETL 286

Query: 258 GKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLEAVFL 317
           GKIGTDIED+KCSWLVV+ALER  E Q  +L+ENYGK DP+ VAKVK LY+EL+LE VF+
Sbjct: 287 GKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKPDPSNVAKVKDLYKELDLEGVFM 346

Query: 318 DYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355
           +YE++SY+KL   IE   S A+Q VLKSFL KIYKRQK
Sbjct: 347 EYESKSYEKLTGAIEGHQSKAIQAVLKSFLAKIYKRQK 384



>AT4G17190.1 | chr4:9648743-9650865 REVERSE LENGTH=343
          Length = 342

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/338 (68%), Positives = 283/338 (83%)

Query: 18  KEEFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLSVVDSYKLLKGT 77
           K  F  +Y VLK +LL+DP+FEFT  SRQW++RMLDYNV GGK NRGLSVVDSYKLLK  
Sbjct: 5   KSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLKQG 64

Query: 78  NVLSQEDMFLASTLGWCVEWLQAYFLVLDDIMDDSHTRRGQPCWFRVPQVGSIAINDGII 137
             L++++ FL+  LGWC+EWLQAYFLVLDDIMD+S TRRGQPCWFR P+VG IAINDGI+
Sbjct: 65  QDLTEKETFLSCALGWCIEWLQAYFLVLDDIMDNSVTRRGQPCWFRKPKVGMIAINDGIL 124

Query: 138 LRNHITRMLRLHFRGKLYYADLLDLFNEVEFKTASGQLLDLITTHEGEKDLNKYNIGVHR 197
           LRNHI R+L+ HFR   YY DL+DLFNEVEF+TA GQ++DLITT +GEKDL+KY++ +HR
Sbjct: 125 LRNHIHRILKKHFREMPYYVDLVDLFNEVEFQTACGQMIDLITTFDGEKDLSKYSLQIHR 184

Query: 198 RIVQYKTSYYSFYLPVACALLLSGEDLTKYGAVEDILVKMGIYFQVQDDYLDCYGDPKFI 257
           RIV+YKT+YYSFYLPVACALL++GE+L  +  V+ +LV MGIYFQVQDDYLDC+ DP+ +
Sbjct: 185 RIVEYKTAYYSFYLPVACALLMAGENLENHTDVKTVLVDMGIYFQVQDDYLDCFADPETL 244

Query: 258 GKIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLEAVFL 317
           GKIGTDIED+KCSWLVV+ALER  E Q  +L+ENYGK +P+ VAKVK+LY+EL+LE  F+
Sbjct: 245 GKIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKAEPSNVAKVKALYKELDLEGAFM 304

Query: 318 DYENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKRQK 355
           +YE ESY+KL   IEA  S A+Q VLKSFL KIYKRQK
Sbjct: 305 EYEKESYEKLTKLIEAHQSKAIQAVLKSFLAKIYKRQK 342



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,638,887
Number of extensions: 330710
Number of successful extensions: 672
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 672
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)