BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0539800 Os05g0539800|AK061570
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G26070.1 | chr2:11105741-11106607 REVERSE LENGTH=251 300 4e-82
AT3G51040.1 | chr3:18952281-18953060 REVERSE LENGTH=232 225 2e-59
>AT2G26070.1 | chr2:11105741-11106607 REVERSE LENGTH=251
Length = 250
Score = 300 bits (768), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 126/216 (58%), Positives = 168/216 (77%)
Query: 17 EMQELWPLGEVDQKGTRFPCCIVWTPLPVVSWLAPYIGHVGIAREDGTVMDFAGSNFVSV 76
+ +LWPL E+D K ++FPCCIVWTPLPVVSWLAP+IGH+G+ REDG ++DFAGSNF++V
Sbjct: 34 DEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIGLCREDGVILDFAGSNFINV 93
Query: 77 DDLAYGSAARYLQLDRRKCCFPANLAAHVCARSYEHSEAGTAISWDDALQSGARRFEHKC 136
DD A+G ARYLQLDR KCC P N+ H C ++H++ GTA +WD+AL S R FEHK
Sbjct: 94 DDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGTARTWDNALSSSTRSFEHKT 153
Query: 137 YNLFTCNSHSFVASCLNRLAYGGSVGWNVLNLAALVWLRGRWLGKMAVVRSLLPFAAVAC 196
YN+FTCN HSFVA+CLNRL YGGS+ WN++N+A L+ ++G+W+ +VVRS LP A V
Sbjct: 154 YNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVAILLMIKGKWINGSSVVRSFLPCAVVTS 213
Query: 197 VGVLMAGWSFLISMAAFSSLLLGWFVLGVYCFKGLV 232
+GV++ GW FLI +++FS LL WF++ YCFK ++
Sbjct: 214 LGVVLVGWPFLIGLSSFSLLLFAWFIIATYCFKNII 249
>AT3G51040.1 | chr3:18952281-18953060 REVERSE LENGTH=232
Length = 231
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 143/210 (68%), Gaps = 4/210 (1%)
Query: 26 EVDQKGTRFPCCIVWTPLPVVSWLAPYIGHVGIAREDGTVMDFAGSNFVSVDDLAYGSAA 85
++D K RFPCCIVWTPLP +SWL P+IGHVGI REDG ++DFAG NFV VD+ A+G+ +
Sbjct: 21 KIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDGVILDFAGPNFVCVDNFAFGAVS 80
Query: 86 RYLQLDRR-KCCFPANLAAHVCARSYEHSEAG--TAISWDDALQSGARRFEHKCYNLFTC 142
RY+Q+++ + ++ R YE E +WDDAL+ + ++H YN+ TC
Sbjct: 81 RYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPTWDDALRKSTQEYQHHSYNILTC 140
Query: 143 NSHSFVASCLNRLAYGGSVGWNVLNLAALVWLRGRWLGKMAVVRSLLPFAAVACVGVLMA 202
N HSFVA+ LNRL+ S GWNV+NLA LV +GRW+ K A+V+SLLP V +G+L+
Sbjct: 141 NCHSFVANNLNRLSI-KSGGWNVVNLATLVLFKGRWVNKTAIVKSLLPPLIVYTIGILLG 199
Query: 203 GWSFLISMAAFSSLLLGWFVLGVYCFKGLV 232
GW+F+ S + LL GWF++G YCFK L+
Sbjct: 200 GWTFIASCSILVVLLTGWFIIGTYCFKKLI 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,268,375
Number of extensions: 206215
Number of successful extensions: 527
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)