BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0539600 Os05g0539600|AK066441
(171 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G56450.1 | chr5:22858772-22859764 REVERSE LENGTH=331 114 2e-26
AT4G28390.1 | chr4:14041486-14042781 REVERSE LENGTH=380 80 4e-16
AT5G13490.1 | chr5:4336034-4337379 FORWARD LENGTH=386 80 5e-16
AT3G08580.1 | chr3:2605706-2607030 REVERSE LENGTH=382 78 2e-15
AT5G17400.1 | chr5:5729015-5730104 REVERSE LENGTH=307 66 8e-12
AT4G26180.1 | chr4:13260263-13261887 REVERSE LENGTH=326 54 4e-08
AT4G01100.2 | chr4:477411-479590 FORWARD LENGTH=367 49 1e-06
>AT5G56450.1 | chr5:22858772-22859764 REVERSE LENGTH=331
Length = 330
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 67/92 (72%), Gaps = 5/92 (5%)
Query: 47 EFERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXX-----XXXXXXXXXXXDCVAR 101
F++DL+AGA MGG VHT+VAPIERAKLLLQTQ+ N D + R
Sbjct: 29 HFQKDLLAGAVMGGVVHTIVAPIERAKLLLQTQESNIAIVGDEGHAGKRRFKGMFDFIFR 88
Query: 102 TVRDEGVLSLWRGNGTAVIRYYPSVALNFSLK 133
TVR+EGVLSLWRGNG++V+RYYPSVALNFSLK
Sbjct: 89 TVREEGVLSLWRGNGSSVLRYYPSVALNFSLK 120
>AT4G28390.1 | chr4:14041486-14042781 REVERSE LENGTH=380
Length = 379
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 48/86 (55%)
Query: 48 FERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEG 107
F D + G T APIER KLL+Q QD DC ARTV+DEG
Sbjct: 79 FLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGISDCFARTVKDEG 138
Query: 108 VLSLWRGNGTAVIRYYPSVALNFSLK 133
+L+LWRGN VIRY+P+ ALNF+ K
Sbjct: 139 MLALWRGNTANVIRYFPTQALNFAFK 164
>AT5G13490.1 | chr5:4336034-4337379 FORWARD LENGTH=386
Length = 385
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 46/87 (52%)
Query: 47 EFERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDE 106
F D + G T APIER KLL+Q QD DC RT+RDE
Sbjct: 83 NFAIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKAGRLTEPYKGIRDCFGRTIRDE 142
Query: 107 GVLSLWRGNGTAVIRYYPSVALNFSLK 133
G+ SLWRGN VIRY+P+ ALNF+ K
Sbjct: 143 GIGSLWRGNTANVIRYFPTQALNFAFK 169
>AT3G08580.1 | chr3:2605706-2607030 REVERSE LENGTH=382
Length = 381
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 45/87 (51%)
Query: 47 EFERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDE 106
F D + G T APIER KLL+Q QD DC RT++DE
Sbjct: 79 NFALDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDE 138
Query: 107 GVLSLWRGNGTAVIRYYPSVALNFSLK 133
G SLWRGN VIRY+P+ ALNF+ K
Sbjct: 139 GFGSLWRGNTANVIRYFPTQALNFAFK 165
>AT5G17400.1 | chr5:5729015-5730104 REVERSE LENGTH=307
Length = 306
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 43/86 (50%)
Query: 48 FERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEG 107
F D V G A + APIER KLLLQ Q +C R R+EG
Sbjct: 10 FSADFVMGGAAAIVAKSAAAPIERVKLLLQNQGEMIKTGHLIRPYTGLGNCFTRIYREEG 69
Query: 108 VLSLWRGNGTAVIRYYPSVALNFSLK 133
VLS WRGN VIRY+P+ A NF+ K
Sbjct: 70 VLSFWRGNQANVIRYFPTQASNFAFK 95
>AT4G26180.1 | chr4:13260263-13261887 REVERSE LENGTH=326
Length = 325
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 48 FERDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEG 107
F ++L+AG GG T VAP+ER K+L QT+ + + + EG
Sbjct: 17 FAKELIAGGVTGGIAKTAVAPLERIKILFQTRRDE-------FKRIGLVGSINKIGKTEG 69
Query: 108 VLSLWRGNGTAVIRYYPSVALNF 130
++ +RGNG +V R P AL++
Sbjct: 70 LMGFYRGNGASVARIVPYAALHY 92
>AT4G01100.2 | chr4:477411-479590 FORWARD LENGTH=367
Length = 366
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 50 RDLVAGAAMGGAVHTVVAPIERAKLLLQTQDGNXXXXXXXXXXXXXXDCVARTVRDEGVL 109
+ L AG GG T VAP+ER K+LLQ Q+ + + R EG+
Sbjct: 40 KSLFAGGVAGGVSRTAVAPLERMKILLQVQNPH------NIKYSGTVQGLKHIWRTEGLR 93
Query: 110 SLWRGNGTAVIRYYPSVALNFSLKVPTPTPKPPRHFCSYCLF 151
L++GNGT R P+ A+ F + + F + C F
Sbjct: 94 GLFKGNGTNCARIVPNSAVKF-----FSYEQASKSFSNLCFF 130
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,743,173
Number of extensions: 96653
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 8
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)