BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0534600 Os05g0534600|AK068203
(709 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80000.1 | chr1:30093195-30096742 FORWARD LENGTH=606 163 3e-40
AT1G15280.2 | chr1:5252538-5256214 FORWARD LENGTH=586 97 4e-20
>AT1G80000.1 | chr1:30093195-30096742 FORWARD LENGTH=606
Length = 605
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 145/425 (34%), Positives = 198/425 (46%), Gaps = 46/425 (10%)
Query: 296 SRPLYGNAKSNKSAPRVVRGRGSKRYQPHWRSTAEISSEHNNKSQNLENTSSNANLGKHQ 355
S+ GN N+ V RGRG++RY+ R+ + S +SQN S+ +LG+
Sbjct: 216 SKEFTGNGHQNQFPKAVTRGRGARRYEVALRNGNQAPSVQTKQSQNSSVEVSHVDLGRPP 275
Query: 356 HQASNSQPERGFPMKQSFASNLNSASPPFYPSRPSHQELPVSQRGDGQPSTTTRHFSSPI 415
+ + + E K FAS+LNSASPPFYPSR ++ + + + +
Sbjct: 276 TETATLETEAIQAKKNVFASSLNSASPPFYPSRSNN-------------NLAQKDVQAGM 322
Query: 416 GMEHVSPTPQYGPLLRGKAFVPSAGHGKLHAEVPIKGMDHPSFHXXXXXXXXQFPIATNQ 475
G H++ P GK F G + + H Q +
Sbjct: 323 GRLHINENPN----PTGKKF------GNTKSSSLWGRTAQTTSHGRGVPPHGQVLYQQSP 372
Query: 476 VTGNSAKSPHPIVQQRLVQSFNQSTPKMPGQMFAAQFASSDKLPSSMQSTSTILTEGTEI 535
G+ SP I + + + +QS ++PGQ+F A LPSS T + +E +
Sbjct: 373 NQGDKVSSPMQI--RGMPKGTDQSCTQLPGQVFNQHSAVISLLPSSPPKTGS--SENPYL 428
Query: 536 SSPHGSNKSNTRLMAKGQHSDQGEEHASFMYGGAQVLGTTGSL---GDQNFHGTPALFPV 592
S S L+AKG+ S Q SFMYGG Q +G G G+ NF PA PV
Sbjct: 429 SGEIESAVETGALVAKGKGSLQPSGRGSFMYGGTQFMGPAGMAAGHGNPNF---PAFLPV 485
Query: 593 MQFGGQHPGGTGVPSIGMALPGFVSQQQLGLSNSEMTWLPILAGASGALGATYGSPYITV 652
MQFGGQH GVP+ GMALPG+ Q + G N EMTWLPILAG GALG +Y PY +
Sbjct: 486 MQFGGQH---GGVPTFGMALPGYF-QPEHGTGNPEMTWLPILAGP-GALGGSYCPPYTVL 540
Query: 653 DGSYY---PRTSEHASSSVSLREPSASSQLKSQEITEALNDELSQRQH-----KPRRYSE 704
DGSY P A SS + + + E E N+ SQR + +PRRYSE
Sbjct: 541 DGSYQADKPGLPSSAGSSSQENSSNNPNDEEPMERPEVTNNGNSQRSNSNPNKQPRRYSE 600
Query: 705 MNFGK 709
M+F K
Sbjct: 601 MSFSK 605
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 142 PYAVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAKEDQAWVHDRFDEMN 194
P+AVPTAGAFYMHDDRFQE RRM G RRLW +++++ W HD+F+EMN
Sbjct: 131 PFAVPTAGAFYMHDDRFQELDA-ASNRRMRGGRRLWQSRDERKWGHDKFEEMN 182
>AT1G15280.2 | chr1:5252538-5256214 FORWARD LENGTH=586
Length = 585
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 144/335 (42%), Gaps = 45/335 (13%)
Query: 384 FYPSRPSHQELPVSQRGDGQPSTTTRHFSSPIGMEHVSPTPQYGPLLRGKAF-VPSAGHG 442
FYPS PS + Q T +P G ++ + Y P+ K S G G
Sbjct: 287 FYPSAPSSNVVHGIQV--SMERLHTNESVTPSGKKYRNTKSGYSPVWTAKTLQSTSQGRG 344
Query: 443 KLHAEVPIKGMDHPSFHXXXXXXXXQF--PIATNQVTGNSAKSPHPIVQQRLVQSFNQST 500
P G +F+ +F P+ N + + + P
Sbjct: 345 -----APAAGN---TFYPQSHSQGDRFSSPMQLNGDSKGTGQRPS--------------- 381
Query: 501 PKMPGQMFAAQFASSDKLPSSMQSTSTILTEGTEISSPHGSNKSNTRLMAKGQHSDQGEE 560
GQ F A L SS Q TS L+ S+ L+AKG+ + +
Sbjct: 382 ----GQGFDQHSAVVRSLSSSPQKTS--LSRNRYPPDEIESSSETAALIAKGKGTLRPGG 435
Query: 561 HASFMYGGAQVLGTTGSLGDQNFHGTPALFPVMQFGGQHPGGTGVPSIGMALPGFVSQQQ 620
+SFMY G+Q++G SL + P PVMQFGGQH GVP+ GMA PG+V Q +
Sbjct: 436 SSSFMYSGSQMMGRPESLTSADNSNFPTFLPVMQFGGQH---GGVPTFGMAYPGYV-QSE 491
Query: 621 LGLSNSEMTWLPILAGASGALGATYGSPYITVDGSYYPRTSEHAS-SSVSLREPSASSQL 679
G+ N EMTW+P+LAG GALGA+Y P ++ P A SS + + +
Sbjct: 492 DGVRNPEMTWMPVLAGP-GALGASYSPPPYAAHQAHNPGLPSSAGFSSKDSSTNTLNDLV 550
Query: 680 KSQEITEALNDELSQRQ-----HKPRRYSEMNFGK 709
K E E + +S+RQ +PRRYSEM F K
Sbjct: 551 KPMESPEVAENGVSERQSNNPSKQPRRYSEMTFSK 585
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 144 AVPTAGAFYMHDDRFQEARGHGRQRRMVGDRRLWNAKEDQAWVHDRFDEMNLHDFHND 201
AVPT GAFYMHDDRFQE G +R G R+ + E++ W HD+F+EMN + H+D
Sbjct: 110 AVPTGGAFYMHDDRFQEMSAGGNRRMRGGRRQWGSG-EERKWGHDKFEEMNTGEKHSD 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,989,117
Number of extensions: 612617
Number of successful extensions: 1482
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1472
Number of HSP's successfully gapped: 5
Length of query: 709
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 603
Effective length of database: 8,200,473
Effective search space: 4944885219
Effective search space used: 4944885219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)