BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0533800 Os05g0533800|Os05g0533800
(125 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29480.1 | chr4:14486265-14487257 REVERSE LENGTH=123 171 7e-44
AT4G26210.1 | chr4:13282370-13283118 FORWARD LENGTH=123 164 7e-42
AT2G19680.1 | chr2:8501865-8502622 FORWARD LENGTH=123 163 2e-41
>AT4G29480.1 | chr4:14486265-14487257 REVERSE LENGTH=123
Length = 122
Score = 171 bits (434), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 75/121 (61%), Positives = 93/121 (76%)
Query: 4 LASKLAQMQXXXXXXXXXXXKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLA 63
+ASKL Q+Q KHG +Y+R L+EKN++Y+ +P T+E+CQELSKQL YTRLA
Sbjct: 1 MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLA 60
Query: 64 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 123
S+PGRYE FWKE D KNLW+NR L VE AG+AALFG+E +AW+C GEI GRGFTFTGY
Sbjct: 61 SIPGRYETFWKEVDYAKNLWKNRSGLKVEDAGIAALFGLECFAWYCAGEIAGRGFTFTGY 120
Query: 124 H 124
+
Sbjct: 121 Y 121
>AT4G26210.1 | chr4:13282370-13283118 FORWARD LENGTH=123
Length = 122
Score = 164 bits (416), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 92/121 (76%)
Query: 4 LASKLAQMQXXXXXXXXXXXKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLA 63
+ASKL Q++ KHG Y++ L++KN+ Y+ +P TIE+C ELSKQL YTRLA
Sbjct: 1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLA 60
Query: 64 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 123
S+PGR E+FWKE + VK LW+NR DL VE AG+AALFG+E +AW+C GEIVGRGFTFTGY
Sbjct: 61 SIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120
Query: 124 H 124
+
Sbjct: 121 Y 121
>AT2G19680.1 | chr2:8501865-8502622 FORWARD LENGTH=123
Length = 122
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 92/121 (76%)
Query: 4 LASKLAQMQXXXXXXXXXXXKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYTRLA 63
+ASKL Q+Q KHG +Y++ L+E+N++Y+ +P TIE+C ELSKQL YTRLA
Sbjct: 1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLA 60
Query: 64 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 123
S+PGRYE F KE D KNL +NR +L VE AG+AALFG+E +AWFC GEIVGRGFTFTGY
Sbjct: 61 SIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
Query: 124 H 124
+
Sbjct: 121 Y 121
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,427,624
Number of extensions: 82832
Number of successful extensions: 259
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)