BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0529900 Os05g0529900|Os05g0529900
(325 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G79450.1 | chr1:29887831-29889904 FORWARD LENGTH=351 416 e-116
AT3G12740.1 | chr3:4049739-4051561 FORWARD LENGTH=351 414 e-116
AT1G54320.1 | chr1:20275732-20277793 REVERSE LENGTH=350 414 e-116
AT1G16360.1 | chr1:5593493-5595179 REVERSE LENGTH=337 398 e-111
AT5G46150.2 | chr5:18708735-18710424 REVERSE LENGTH=344 337 4e-93
>AT1G79450.1 | chr1:29887831-29889904 FORWARD LENGTH=351
Length = 350
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/320 (62%), Positives = 244/320 (76%), Gaps = 5/320 (1%)
Query: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
+PKYS+FTQQELPA KP+ TP VI F + G++FIP+G++ + ASQ VVE+VD+YD +C
Sbjct: 27 RPKYSRFTQQELPACKPILTPRWVILTFLVAGVVFIPLGVICLFASQGVVEIVDRYDTDC 86
Query: 62 V---TANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQ 118
+ + N+ V +IQ + DK C RTITV K MK P+ VYYQLENFYQNHRRYVKSR+D Q
Sbjct: 87 IPTSSRNNMVAYIQG-EGDKICKRTITVTKAMKHPVYVYYQLENFYQNHRRYVKSRNDAQ 145
Query: 119 LRSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSS 178
LRS + +KTC PE + GG PIVPCGL+AWSLFNDT++FS I+W S
Sbjct: 146 LRSPKEEHDVKTCAPED-NVGGEPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGISWKS 204
Query: 179 DRTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETD 238
DR KFG +VFP+NFQKG IGGG LN PLSEQEDLIVWMRTAALPTFRKLYG+IETD
Sbjct: 205 DRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETD 264
Query: 239 IMASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFV 298
+ A D ITV++QNNYNTYSF G K LVLSTTSW+GG+N+F+G AY+ +G+I +A+ F
Sbjct: 265 LHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFA 324
Query: 299 GLNMVKPRTLGDPSYLSWNK 318
L +VKPR LGDPSYLSWN+
Sbjct: 325 VLYLVKPRQLGDPSYLSWNR 344
>AT3G12740.1 | chr3:4049739-4051561 FORWARD LENGTH=351
Length = 350
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/320 (62%), Positives = 242/320 (75%), Gaps = 5/320 (1%)
Query: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
+PKYSKFTQQELPA KP+ TPG VI F +I +IFIP+G++S+ ASQ+VVE+VD+YD C
Sbjct: 28 RPKYSKFTQQELPACKPILTPGWVISTFLIISVIFIPLGVISLFASQDVVEIVDRYDSAC 87
Query: 62 VTAND---KVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQ 118
+ +D KV +IQ T +K+CTRT+ VPK MK PI VYYQLENFYQNHRRYVKSRSD Q
Sbjct: 88 IPLSDRANKVAYIQGT-GNKSCTRTLIVPKRMKQPIYVYYQLENFYQNHRRYVKSRSDSQ 146
Query: 119 LRSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSS 178
LRS + + I C PE GG PIVPCGLIAWSLFNDT+ S IAW S
Sbjct: 147 LRSVKDENQIDACKPED-DFGGQPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGIAWKS 205
Query: 179 DRTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETD 238
D+ KFG +VFP+NFQKG L GG L+ PLS+QEDLIVWMRTAALPTFRKLYG+IE+D
Sbjct: 206 DKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESD 265
Query: 239 IMASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFV 298
+ + I V +QNNYNTYSF G K LVLSTTSW+GGKN+F+G AY+ +G I F++ALAF
Sbjct: 266 LEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFT 325
Query: 299 GLNMVKPRTLGDPSYLSWNK 318
+ +VKPR LGDP+YLSWN+
Sbjct: 326 VMYLVKPRRLGDPTYLSWNR 345
>AT1G54320.1 | chr1:20275732-20277793 REVERSE LENGTH=350
Length = 349
Score = 414 bits (1065), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/323 (62%), Positives = 242/323 (74%), Gaps = 6/323 (1%)
Query: 2 KPKYSKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGEC 61
+PKYSKFTQQELPA KP+ TPG VI F ++ +IFIP+G++S+ ASQ+VVE+VD+YD EC
Sbjct: 27 RPKYSKFTQQELPACKPILTPGWVISTFLIVSVIFIPLGVISLFASQDVVEIVDRYDTEC 86
Query: 62 VTA---NDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQ 118
+ A +KV +IQ DK C R + V K MK PI VYYQLENFYQNHRRYVKSRSD Q
Sbjct: 87 IPAPARTNKVAYIQG-DGDKVCNRDLKVTKRMKQPIYVYYQLENFYQNHRRYVKSRSDSQ 145
Query: 119 LRSKEFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSS 178
LRS ++ + I C PE GG PIVPCGLIAWSLFNDT+ S IAW S
Sbjct: 146 LRSTKYENQISACKPED-DVGGQPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGIAWKS 204
Query: 179 DRTIKFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETD 238
D+ KFG+ VFP+NFQKG + GG L+ ++PLSEQEDLIVWMRTAALPTFRKLYG+IE+D
Sbjct: 205 DKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESD 264
Query: 239 IMASDEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFV 298
+ D I V + NNYNTYSF G K LVLSTTSW+GGKN+F+G AY+ +G I F++ALAF
Sbjct: 265 LEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFT 324
Query: 299 GLNMVKPRTLGDPSYLSWNKENP 321
+ +VKPR LGDPSYLSWN+ NP
Sbjct: 325 IMYLVKPRRLGDPSYLSWNR-NP 346
>AT1G16360.1 | chr1:5593493-5595179 REVERSE LENGTH=337
Length = 336
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/316 (59%), Positives = 239/316 (75%), Gaps = 5/316 (1%)
Query: 6 SKFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGECV--- 62
S+FTQQELPA KP+ TP VI F + G++FIP+G++ + ASQ V+E+VD+YD +C+
Sbjct: 17 SRFTQQELPACKPILTPKWVILTFLVSGVVFIPLGVICLFASQGVIEIVDRYDTDCIPLS 76
Query: 63 TANDKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLRSK 122
+ ++KV +IQ + DK C RTITV K MK P+ VYYQLEN+YQNHRRYVKSR D QLRS
Sbjct: 77 SRDNKVRYIQGLE-DKRCNRTITVTKTMKNPVYVYYQLENYYQNHRRYVKSRQDGQLRSP 135
Query: 123 EFSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSDRTI 182
+ K+C PE + GG PIVPCGL+AWSLFNDT+ F+ I+W SDR
Sbjct: 136 KDEHETKSCAPED-TLGGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRES 194
Query: 183 KFGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMAS 242
KFG +VFP+NFQKG LIGG L++ +PLSEQEDLIVWMRTAALPTFRKLYG+I+TD+ A
Sbjct: 195 KFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAG 254
Query: 243 DEITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGLNM 302
D I V++QNNYNTYSF G K LVLSTTSW+GG+N+F+G AY+ +G+I +A++F L +
Sbjct: 255 DTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYL 314
Query: 303 VKPRTLGDPSYLSWNK 318
KPR LGDPSYLSWN+
Sbjct: 315 AKPRQLGDPSYLSWNR 330
>AT5G46150.2 | chr5:18708735-18710424 REVERSE LENGTH=344
Length = 343
Score = 337 bits (865), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/317 (52%), Positives = 222/317 (70%), Gaps = 7/317 (2%)
Query: 7 KFTQQELPAWKPLYTPGIVIGAFSLIGIIFIPIGLVSIAASQEVVELVDKYDGECVTAN- 65
+F QQ+LPA KP+ TP VI F L+G +FIPIGL+++ AS++ +E++D+YD EC+
Sbjct: 28 QFKQQKLPACKPVLTPISVITVFMLMGFVFIPIGLITLRASRDAIEIIDRYDVECIPEEY 87
Query: 66 --DKVGFIQDTKTDKACTRTITVPKPMKGPIQVYYQLENFYQNHRRYVKSRSDKQLRSKE 123
+K+ +I D+ K CTR + V K MK PI +YYQL+N+YQNHRRYVKSRSD+QL
Sbjct: 88 RTNKLLYITDSSIPKNCTRYLKVQKYMKAPIFIYYQLDNYYQNHRRYVKSRSDQQLLHGL 147
Query: 124 FSSVIKTCDPEAISEGGAPIVPCGLIAWSLFNDTFTFSXXXXXXXXXXXXIAWSSDRTIK 183
S +C+PE S G PIVPCGLIAWS+FNDTFTFS IAW SDR K
Sbjct: 148 EYSHTSSCEPEE-SSNGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHK 206
Query: 184 FGSDVFPENFQKGGLIGGGQLNEKLPLSEQEDLIVWMRTAALPTFRKLYGRIETDIMASD 243
FG +V+P NFQ G LIGG +L+ K+PLS+QED IVWMR AAL +FRKLYGRIE D+
Sbjct: 207 FGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGK 266
Query: 244 EITVVIQNNYNTYSFGGTKALVLSTTSWIGGKNNFIGFAYVAIGTISFLIALAFVGLNMV 303
+ V + NNYNTYSF G K L+LST++W+GG+N+F+G Y+ +G+ S +I++ F+ L++
Sbjct: 267 VVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLK 326
Query: 304 KPRTLGDPSYLSWNKEN 320
PR GD SWNK++
Sbjct: 327 NPRPYGDN---SWNKKS 340
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,271,808
Number of extensions: 294456
Number of successful extensions: 622
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 5
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)