BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0529400 Os05g0529400|AK063846
(113 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G53400.1 | chr1:19925009-19926400 FORWARD LENGTH=115 137 2e-33
AT5G45740.1 | chr5:18556975-18558097 REVERSE LENGTH=119 135 5e-33
AT1G16960.1 | chr1:5799998-5800624 FORWARD LENGTH=115 119 3e-28
>AT1G53400.1 | chr1:19925009-19926400 FORWARD LENGTH=115
Length = 114
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 1 MGCAGST-PKVDENSXXXXXXXXXXHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDXXX 59
MGCAGST + D + HTQ IT +L K+REEFWDTAPHYGG+KEIWD
Sbjct: 1 MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60
Query: 60 XXXXXXXXXXQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIRE 112
Q IV+SAG++V N+D+T+CYDERGAKYELPKYVLSEPTNL E
Sbjct: 61 AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNLEEE 113
>AT5G45740.1 | chr5:18556975-18558097 REVERSE LENGTH=119
Length = 118
Score = 135 bits (340), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 77/115 (66%), Gaps = 3/115 (2%)
Query: 1 MGCAGSTPKVDENSXXXXXXXXX---XHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDX 57
MGC GS+ +E HT+ IT QL+ MREEFWDT+PHYGGQ+EIW+
Sbjct: 1 MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60
Query: 58 XXXXXXXXXXXXQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLIRE 112
QTIV+SAG++V N D+TLC+DERGA+YELP+YVLSEPTNLIRE
Sbjct: 61 LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 115
>AT1G16960.1 | chr1:5799998-5800624 FORWARD LENGTH=115
Length = 114
Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
Query: 1 MGCAGSTPKVDENSXXXXXXXXXXHTQAITPTQLSKMREEFWDTAPHYGGQKEIWDXXXX 60
MGC+ S + H Q I+ +L++MREEFWDTAPHYGG+KEIWD
Sbjct: 1 MGCSSSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALRA 60
Query: 61 XXXXX-XXXXQTIVNSAGIVVSNSDMTLCYDERGAKYELPKYVLSEPTNLI 110
QTI+ SAG++V N+D+T+CYDE+G+KYELPKYVL +P+NLI
Sbjct: 61 AAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.129 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,009,267
Number of extensions: 53376
Number of successful extensions: 54
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)