BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0529200 Os05g0529200|AK065770
(242 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14440.1 | chr4:8306946-8307662 REVERSE LENGTH=239 176 1e-44
AT1G65520.1 | chr1:24361171-24361893 REVERSE LENGTH=241 156 8e-39
AT4G14430.1 | chr4:8304910-8305632 REVERSE LENGTH=241 154 4e-38
>AT4G14440.1 | chr4:8306946-8307662 REVERSE LENGTH=239
Length = 238
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 127/234 (54%), Gaps = 12/234 (5%)
Query: 1 MCTLEQRGRVFVLTLTGDGEHRLGHSLIGSIRXXXXXXXXXXXXXXXXXXXXXXXEGRFF 60
MCTLE+RG +F+LTLTG+ EHR I S+ G+FF
Sbjct: 1 MCTLEKRGDLFLLTLTGEDEHRFHPDTIASV---LSLLEQAKSQSTKGSVLITTGHGKFF 57
Query: 61 SNGLDI------GPGGIPPSRVGEXXXXXXXXXXXXXXXXMPTVAAVTGHASAGGFLLTL 114
SNG D+ G G I R+ + MPT+AA+ GHA+A G + L
Sbjct: 58 SNGFDLAWAQSAGHGAI--KRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115
Query: 115 CHDYRLMRADRGVLYMSEIDIGLPLPPYFVAILRAKITAAHALRDVTLRGRKLKAAEAKE 174
HDY MR DRGVLYMSE+DIGLP+P YF A++ AK+ + A R++ L G+KLK EA
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175
Query: 175 MGIVDVVC-PXXXXXXXXXVKLAEQLAARKWNGNVYSSIRISMFPEACRSVGIV 227
+GIVD V L E LAA+KWNG VY++IR S++PE CR V +
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDLT 229
>AT1G65520.1 | chr1:24361171-24361893 REVERSE LENGTH=241
Length = 240
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 117/219 (53%), Gaps = 2/219 (0%)
Query: 1 MCTLEQRGRVFVLTLTGDGEHRLGHSLIGSIRXXXXXXXXXXXXXXXXXXXXXXXEGRFF 60
MC+LE+R R+F+L LTGDGEHRL +L+ S+R +G+FF
Sbjct: 1 MCSLEKRDRLFILKLTGDGEHRLNPTLLDSLRSTINQIRSDPSFSQSVLITTS--DGKFF 58
Query: 61 SNGLDIGPGGIPPSRVGEXXXXXXXXXXXXXXXXMPTVAAVTGHASAGGFLLTLCHDYRL 120
SNG D+ PS MPT+AAVTGHASA G +L + HDY L
Sbjct: 59 SNGYDLALAESNPSLSVVMDAKLRSLVADLISLPMPTIAAVTGHASAAGCILAMSHDYVL 118
Query: 121 MRADRGVLYMSEIDIGLPLPPYFVAILRAKITAAHALRDVTLRGRKLKAAEAKEMGIVDV 180
MR DRG LYMSE+DI L +P +F+A++R KI + A RDV L K+ A +MGIVD
Sbjct: 119 MRRDRGFLYMSELDIELIVPAWFMAVIRGKIGSPAARRDVMLTAAKVTADVGVKMGIVDS 178
Query: 181 VCPXXXXXXXXXVKLAEQLAARKWNGNVYSSIRISMFPE 219
+KL E++ R +G+VY +R S+ E
Sbjct: 179 AYGSAAETVEAAIKLGEEIVQRGGDGHVYGKMRESLLRE 217
>AT4G14430.1 | chr4:8304910-8305632 REVERSE LENGTH=241
Length = 240
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 129/233 (55%), Gaps = 10/233 (4%)
Query: 1 MCTLEQRGRVFVLTLTGDGEHRLGHSLIGSIRXXXXXXXXXXXXXXXXXXXXXXXEGRFF 60
MCTLE+RG +F+LTLTGDGEHR I +I G+FF
Sbjct: 1 MCTLEKRGDLFLLTLTGDGEHRFHPDTIATI---LSLLEQAKSQSTRGSILITTANGKFF 57
Query: 61 SNGLDIGPGGIPPSRVG------EXXXXXXXXXXXXXXXXMPTVAAVTGHASAGGFLLTL 114
SNG D+ S+ G + MPT+AA+ GHA+A G +L L
Sbjct: 58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117
Query: 115 CHDYRLMRADRGVLYMSEIDIGLPLPPYFVAILRAKITAAHALRDVTLRGRKLKAAEAKE 174
HDY MR DRGVLYMSE+DIGL +P YF A++RAKI + A R++ L G+K++ EA
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177
Query: 175 MGIVDVVC-PXXXXXXXXXVKLAEQLAARKWNGNVYSSIRISMFPEACRSVGI 226
+GIVD V+L E+LAA+KW+G VY+SIR S++PE C +G+
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGL 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,067,512
Number of extensions: 118477
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)