BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0527700 Os05g0527700|AK111246
(236 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01070.1 | chr4:461858-463300 REVERSE LENGTH=481 59 2e-09
AT2G29730.1 | chr2:12703652-12705055 FORWARD LENGTH=468 55 3e-08
AT1G01390.1 | chr1:148319-149761 REVERSE LENGTH=481 54 1e-07
AT1G01420.1 | chr1:154566-156011 REVERSE LENGTH=482 52 2e-07
AT3G16520.3 | chr3:5619355-5620833 REVERSE LENGTH=463 50 8e-07
>AT4G01070.1 | chr4:461858-463300 REVERSE LENGTH=481
Length = 480
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 18/207 (8%)
Query: 5 IVLYPGVAVSHFLPMMQLADELVD-HGYAVAVALID---PAFQQHTAFPATVDRVVSSKP 60
+ + P + H +P+++ A LV HG V + P+ Q T +D + SS
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTV----LDSLPSSIS 64
Query: 61 TVRFHRLPRVELPPATATXXXXXXXXXXXXXVRRHNECLHDFLCSMLPGGV--HAFVVDS 118
+V LP V+L T V R N L S + GG A VVD
Sbjct: 65 SVF---LPPVDL---TDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDL 118
Query: 119 LSVEALDVGERLNVPGFVFHPANLGAFAIFLQLPSIRAEGEPSFRELGDNPLELPGLPPM 178
+A DV +VP ++F+P + FL LP + FREL + PL LPG P+
Sbjct: 119 FGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTE-PLMLPGCVPV 177
Query: 179 PASHLFSQFLEHPESQVYKAMMNVSRR 205
A F + + YK +++ ++R
Sbjct: 178 -AGKDFLDPAQDRKDDAYKWLLHNTKR 203
>AT2G29730.1 | chr2:12703652-12705055 FORWARD LENGTH=468
Length = 467
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 9/186 (4%)
Query: 5 IVLYPGVAVSHFLPMMQLADELVDHGYAVAVALIDPAFQQHTAFPATVDRVVSSKPTVRF 64
++ P V H +P ++ A L++ + + ++ Q + V + SS+P VRF
Sbjct: 6 LIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRF 65
Query: 65 HRLPRVELPPATATXXXXXXXXXXXXXVRRH----NECLHDFLCSMLPGG--VHAFVVDS 118
+P +E P + + R+ + D L S+ G V VVD
Sbjct: 66 IDVPELEEKPTLGS--TQSVEAYVYDVIERNIPLVRNIVMDILTSLALDGVKVKGLVVDF 123
Query: 119 LSVEALDVGERLNVPGFVFHPANLGAFAIFLQLPSIRAEGEPSFRELGDNPLELPG-LPP 177
+ +DV + +++P +VF N G A+ L + F + L +PG + P
Sbjct: 124 FCLPMIDVAKDISLPFYVFLTTNSGFLAMMQYLADRHSRDTSVFVRNSEEMLSIPGFVNP 183
Query: 178 MPASHL 183
+PA+ L
Sbjct: 184 VPANVL 189
>AT1G01390.1 | chr1:148319-149761 REVERSE LENGTH=481
Length = 480
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 22/209 (10%)
Query: 5 IVLYPGVAVSHFLPMMQLADELVDHGYAVAVALIDPAFQQHTAFPATVDR-VVSSKPTVR 63
I + P + H +P ++LA LV H +I P+ R V++S P+
Sbjct: 9 IAIMPSPGMGHLIPFVELAKRLVQHDCFTVTMII-----SGETSPSKAQRSVLNSLPS-- 61
Query: 64 FHRLPRVELPPATATX--XXXXXXXXXXXXVRRHNECLHDFLCSM-----LPGGVHAFVV 116
+ V LPPA + + R N L + S+ LP VV
Sbjct: 62 --SIASVFLPPADLSDVPSTARIETRAMLTMTRSNPALRELFGSLSTKKSLPA---VLVV 116
Query: 117 DSLSVEALDVGERLNVPGFVFHPANLGAFAIFLQLPSIRAEGEPSFRELGDNPLELPGLP 176
D +A DV +V ++F+ +N + FL LP + FR L + PL++PG
Sbjct: 117 DMFGADAFDVAVDFHVSPYIFYASNANVLSFFLHLPKLDKTVSCEFRYLTE-PLKIPGCV 175
Query: 177 PMPASHLFSQFLEHPESQVYKAMMNVSRR 205
P+ F ++ YK +++ ++R
Sbjct: 176 PITGKD-FLDTVQDRNDDAYKLLLHNTKR 203
>AT1G01420.1 | chr1:154566-156011 REVERSE LENGTH=482
Length = 481
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 25/210 (11%)
Query: 5 IVLYPGVAVSHFLPMMQLADELVD-HGYAVAVALIDPAFQQHTAFPATVDR-VVSSKPTV 62
+ + P + H +P+++LA L+D HG+ V I P + P+ R V++S P+
Sbjct: 9 VAIIPSPGIGHLIPLVELAKRLLDNHGFTVT--FIIPG----DSPPSKAQRSVLNSLPS- 61
Query: 63 RFHRLPRVELPPATATX--XXXXXXXXXXXXVRRHNECLHDFLCSM-----LPGGVHAFV 115
+ V LPPA + V R N L + S+ LP V
Sbjct: 62 ---SIASVFLPPADLSDVPSTARIETRISLTVTRSNPALRELFGSLSAEKRLPA---VLV 115
Query: 116 VDSLSVEALDVGERLNVPGFVFHPANLGAFAIFLQLPSIRAEGEPSFRELGDNPLELPGL 175
VD +A DV +V ++F+ +N L LP + FREL + P+ +PG
Sbjct: 116 VDLFGTDAFDVAAEFHVSPYIFYASNANVLTFLLHLPKLDETVSCEFRELTE-PVIIPGC 174
Query: 176 PPMPASHLFSQFLEHPESQVYKAMM-NVSR 204
P+ F + + + YK ++ NV R
Sbjct: 175 VPITGKD-FVDPCQDRKDESYKWLLHNVKR 203
>AT3G16520.3 | chr3:5619355-5620833 REVERSE LENGTH=463
Length = 462
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 9/209 (4%)
Query: 2 KKTIVLYPGVAVSHFLPMMQLADELVDHG--YAVAVALIDPAFQQHTAFPATVDRVVSSK 59
++ IVLYP + H + M++L ++ ++ + L+ P +Q + + V SS
Sbjct: 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPEST-ATYISSVSSSF 61
Query: 60 PTVRFHRLPRVELPPATATXXXXXXXXXXXXXVRRHNECLHDFLCSMLPG-GVHAFVVDS 118
P++ FH LP V P ++++ + N +H L S+ V A ++D
Sbjct: 62 PSITFHHLPAVT-PYSSSSTSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDF 120
Query: 119 LSVEALDVGERLNVPGFVFHPANLGAFAIFLQLPSIRAEGEPSFRELGDNP-LELPGLPP 177
LD+ P + F+ + A LP+I E P + L D P + +PG+PP
Sbjct: 121 FCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID-ETTPG-KNLKDIPTVHIPGVPP 178
Query: 178 MPASHLFSQFLEHPESQVYKAMMNVSRRM 206
M S + LE + +VY + +++
Sbjct: 179 MKGSDMPKAVLER-DDEVYDVFIMFGKQL 206
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,629,918
Number of extensions: 179348
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 5
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 110 (47.0 bits)