BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0526200 Os05g0526200|AK071678
         (271 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55250.1  | chr3:20479302-20480324 FORWARD LENGTH=278          280   5e-76

>AT3G55250.1 | chr3:20479302-20480324 FORWARD LENGTH=278
          Length = 277

 Score =  280 bits (716), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 180/236 (76%), Gaps = 2/236 (0%)

Query: 36  TVVAYMEPNPNSPSSIAGRLIGALPVVGLVARILSDEGGVGGDMIDFAEFRRRVSKKCTV 95
           ++ AY+E  PNS S+ A ++IG+LPV+GL+ARI+SDEGGVG D++DFAEFR+RV  KCT 
Sbjct: 43  SIRAYIE-KPNSFSTFANKVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTP 101

Query: 96  MDSQAFYDFNERRGKAGDPFYVLLCCWLAAVGGGLLKTEEILEGVARLRLSNDIEFEEET 155
            DS+AFY+F +RRGKAG+P YVLLCCW+AAVG GLLK+EEILEGV R+ +SND+EFEE+ 
Sbjct: 102 DDSRAFYEFQQRRGKAGEPLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQN 161

Query: 156 FLDMMKTAKEKRAKLKAPAPQIPMEARAEKALEAIYVCCFGQDMVEDVDVKLLCKMLNAV 215
           F+ +M  A+++RAKL   AP IPME R EKALE IY CCF + ++E+ D KLL  ML AV
Sbjct: 162 FIALMTEARQRRAKLNIDAPTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAV 221

Query: 216 FPSVGRQAVERIVTSMAKQV-AAGERKGPGVKTVSKEAAQRQLKDLEFLKQNKLDS 270
           FPSV +  +ERI+   A +V   GE +    K + KEA Q Q+KDLEFL+Q  ++S
Sbjct: 222 FPSVEKSEIERIIKEKATRVEEGGEEENVMAKRLPKEAIQMQMKDLEFLQQQNIES 277



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,147,415
Number of extensions: 203037
Number of successful extensions: 496
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 174
Effective length of database: 8,447,217
Effective search space: 1469815758
Effective search space used: 1469815758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)